RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA379145" and tax_clade = "Apusozoa"

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tax_superkingdom 1

tax_clade 1

  • Apusozoa · 2 ✖

bioproject 1

  • PRJNA379145 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
401070 401070 PRJNA379145_P_NODE_55061_length_208_cov_2.331429_g52907_i0 PRJNA379145 55061 208 2.331429 4.84937232 Thecamonas trahens 529818 Root_unresolved Root_unresolved 76.8 1.08e-9   NTclustered gi|923130938|ref|XM_013903481.1| 461836 g52907 i0 92.453 0.572115384615385 53 4 25 0 138 190 915 863 Thecamonas trahens ATCC 50062 GDP-L-fucose synthase (AMSG_04147), mRNA blastn 119 76.8 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
24627324 24627324 PRJNA379145_P_NODE_58440_length_195_cov_1.364198_g56286_i0 PRJNA379145 58440 195 1.364198 2.6601861 Thecamonas trahens 529818 Root_unresolved Root_unresolved 67.6 6.02e-7   NTclustered gi|923122628|ref|XM_013899330.1| 461836 g56286 i0 93.478 0.235897435897436 46 2 24 1 23 68 2524 2568 Thecamonas trahens ATCC 50062 major vault protein (AMSG_09422), mRNA blastn 46 67.6 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;