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contig_metadata

9 rows where analysis = "blastn", bioproject = "PRJNA376117" and tax_phylum = "Verrucomicrobiota"

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tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 9 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA376117 · 9 ✖

analysis 1

  • blastn · 9 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
399987 399987 PRJNA376117_P_NODE_34741_length_250_cov_1.305085_g34439_i0 PRJNA376117 34741 250 1.305085 3.2627125 uncultured Verrucomicrobiae bacterium 412056 Bacteria Bacteria 359 1.19e-94   NTclustered gi|2874253690|emb|OY969416.1| 412056 g34439 i0 93.75 95.064 240 13 95 2 1 238 1315557 1315318 MAG: uncultured Verrucomicrobiae bacterium isolate MFD04967.bin.1.157 genome assembly, chromosome: 1 blastn 23766 359 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       uncultured Verrucomicrobiae bacterium
2950632 2950632 PRJNA376117_P_NODE_37343_length_248_cov_0.880000_g37041_i0 PRJNA376117 37343 248 0.88 2.1824 uncultured verrucomicrobium HF0070_15G23 723594 Bacteria Bacteria 93.5 1.32e-14   NTclustered gi|297170473|gb|GU567957.1| 723594 g37041 i0 77.64 5.33870967741935 161 31 64 4 33 190 16163 16005 Uncultured verrucomicrobium HF0070_15G23 genomic sequence blastn 1324 93.5 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         uncultured verrucomicrobium HF0070_15G23
8052863 8052863 PRJNA376117_P_NODE_10187_length_421_cov_2.436782_g9885_i0 PRJNA376117 10187 421 2.436782 10.25885222 uncultured Verrucomicrobiae bacterium 412056 Bacteria Bacteria 617 3.19e-172   NTclustered gi|2874254065|emb|OY970130.1| 412056 g9885 i0 93.128 79.5914489311164 422 27 100 2 1 421 5152796 5152376 MAG: uncultured Verrucomicrobiae bacterium isolate MFD05705.bin.c.1 genome assembly, chromosome: 1 blastn 33508 617 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       uncultured Verrucomicrobiae bacterium
19526016 19526016 PRJNA376117_P_NODE_6376_length_532_cov_1.941176_g6076_i0 PRJNA376117 6376 532 1.941176 10.32705632 uncultured Verrucomicrobiae bacterium 412056 Bacteria Bacteria 833 0   NTclustered gi|2874254065|emb|OY970130.1| 412056 g6076 i0 94.925 178.146616541353 532 27 100 0 1 532 5153565 5154096 MAG: uncultured Verrucomicrobiae bacterium isolate MFD05705.bin.c.1 genome assembly, chromosome: 1 blastn 94774 833 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       uncultured Verrucomicrobiae bacterium
20199752 20199752 PRJNA376117_P_NODE_24736_length_283_cov_2.052381_g24434_i0 PRJNA376117 24736 283 2.052381 5.80823823 Verrucomicrobiota 74201 Bacteria Bacteria 451 2.1999999999999995e-122   NTclustered gi|2874254065|emb|OY970130.1| 412056 g24434 i0 95.406 120.049469964664 283 13 100 0 1 283 5154271 5154553 MAG: uncultured Verrucomicrobiae bacterium isolate MFD05705.bin.c.1 genome assembly, chromosome: 1 blastn 33974 451 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       uncultured Verrucomicrobiae bacterium
20801337 20801337 PRJNA376117_P_NODE_27977_length_272_cov_1.547739_g27675_i0 PRJNA376117 27977 272 1.547739 4.20985008 Akkermansia muciniphila 239935 Bacteria Bacteria 54.7 0.007   NTclustered gi|1805906055|gb|CP027004.1| 239935 g27675 i0 100 2.23897058823529 29 0 11 0 221 249 1454019 1453991 Akkermansia muciniphila strain EB-AMDK-28 chromosome, complete genome blastn 609 54.7 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Akkermansiaceae Akkermansia Akkermansia muciniphila
22076429 22076429 PRJNA376117_P_NODE_31778_length_258_cov_1.664865_g31476_i0 PRJNA376117 31778 258 1.664865 4.2953517 Horticoccus luteus 2862869 Bacteria Bacteria 111 3.82e-20   NTclustered gi|2077391884|gb|CP080507.1| 2862869 g31476 i0 86.869 3.46124031007752 99 13 38 0 159 257 1507126 1507028 Horticoccus luteus strain KSB-15 chromosome, complete genome blastn 893 111 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae Horticoccus Horticoccus luteus
23351661 23351661 PRJNA376117_P_NODE_15499_length_348_cov_2.716364_g15197_i0 PRJNA376117 15499 348 2.716364 9.45294672 uncultured Verrucomicrobiae bacterium 412056 Bacteria Bacteria 462 1.2799999999999998e-125   NTclustered gi|2874253690|emb|OY969416.1| 412056 g15197 i0 90.988 82.0632183908046 344 30 99 1 6 348 1316202 1315859 MAG: uncultured Verrucomicrobiae bacterium isolate MFD04967.bin.1.157 genome assembly, chromosome: 1 blastn 28558 462 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       uncultured Verrucomicrobiae bacterium
23352123 23352123 PRJNA376117_P_NODE_5659_length_570_cov_1.849095_g5361_i0 PRJNA376117 5659 570 1.849095 10.5398415 uncultured Verrucomicrobiae bacterium 412056 Bacteria Bacteria 863 0   NTclustered gi|2874253690|emb|OY969416.1| 412056 g5361 i0 93.913 211.438596491228 575 29 100 6 1 570 1315284 1315857 MAG: uncultured Verrucomicrobiae bacterium isolate MFD04967.bin.1.157 genome assembly, chromosome: 1 blastn 120520 863 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       uncultured Verrucomicrobiae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;