RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA376117" and tax_phylum = "Oomycota"

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tax_superkingdom 1

tax_phylum 1

  • Oomycota · 6 ✖

tax_clade 1

bioproject 1

  • PRJNA376117 · 6 ✖

analysis 1

  • blastn · 6 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
399850 399850 PRJNA376117_P_NODE_25661_length_280_cov_1.845411_g25359_i0 PRJNA376117 25661 280 1.845411 5.1671508 Saprolegnia parasitica 101203 SAR_Eukaryotes SAR_Eukaryotes 147 1.15e-30   NTclustered gi|813157874|ref|XM_012346896.1| 695850 g25359 i0 81.714 27.5285714285714 175 32 63 0 14 188 179 353 Saprolegnia parasitica CBS 223.65 hypothetical protein mRNA blastn 7708 147 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia parasitica
2950798 2950798 PRJNA376117_P_NODE_9623_length_433_cov_5.261111_g9321_i0 PRJNA376117 9623 433 5.261111 22.78061063 Chlamydomyzium dictyuchoides 1190596 SAR_Eukaryotes SAR_Eukaryotes 385 3.63e-102   NTclustered gi|918464139|gb|KT257378.1| 1190596 g9321 i0 83.144 66.5057736720554 439 56 100 15 1 433 896 1322 Chlamydomyzium sp. TYJ-2012 isolate LEV6508 5.8S ribosomal RNA gene and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 28797 385 1 Eukaryota Sar   Oomycota   Myzocytiopsidales Myzocytiopsidaceae Chlamydomyzium Chlamydomyzium dictyuchoides
3624239 3624239 PRJNA376117_P_NODE_10183_length_421_cov_7.258621_g9881_i0 PRJNA376117 10183 421 7.258621 30.55879441 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 545 1.53e-150   NTclustered gi|2440150|emb|X75631.1| 4788 g9881 i0 90.261 65.3206650831354 421 36 99 5 1 418 3279 3697 P.megasperma gene for 28S ribosomal RNA blastn 27500 545 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora megasperma
10603919 10603919 PRJNA376117_P_NODE_6369_length_532_cov_3.204793_g6069_i0 PRJNA376117 6369 532 3.204793 17.04949876 Chlamydomyzium dictyuchoides 1190596 SAR_Eukaryotes SAR_Eukaryotes 448 5.7e-121   NTclustered gi|918464139|gb|KT257378.1| 1190596 g6069 i0 98.425 96.9229323308271 254 4 95 0 279 532 1661 1914 Chlamydomyzium sp. TYJ-2012 isolate LEV6508 5.8S ribosomal RNA gene and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 51563 448 1 Eukaryota Sar   Oomycota   Myzocytiopsidales Myzocytiopsidaceae Chlamydomyzium Chlamydomyzium dictyuchoides
16977538 16977538 PRJNA376117_P_NODE_8734_length_455_cov_1.612565_g8432_i0 PRJNA376117 8734 455 1.612565 7.33717075 Myzocytiopsis humana 135482 SAR_Eukaryotes SAR_Eukaryotes 830 0   NTclustered gi|918464080|gb|KT257319.1| 135482 g8432 i0 99.561 100.382417582418 456 1 100 1 1 455 3360 2905 Lagenidium humanum 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 45674 830 1 Eukaryota Sar   Oomycota   Myzocytiopsidales Myzocytiopsidaceae Myzocytiopsis Myzocytiopsis humana
19525653 19525653 PRJNA376117_P_NODE_2296_length_986_cov_4.739321_g2048_i0 PRJNA376117 2296 986 4.739321 46.72970506 Albugo laibachii 653948 SAR_Eukaryotes SAR_Eukaryotes 1062 0   NTclustered gi|325194423|emb|FR825253.1| 890382 g2048 i0 90.406 97.3225152129817 813 71 99 6 176 986 1134 327 Albugo laibachii Nc14, genomic contig CONTIG_1950_NC14_v4_1284_22758 blastn 95960 1062 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;