RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA376117" and tax_phylum = "Evosea"

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tax_superkingdom 1

tax_phylum 1

  • Evosea · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA376117 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10603885 10603885 PRJNA376117_P_NODE_44669_length_241_cov_0.916667_g44367_i0 PRJNA376117 44669 241 0.916667 2.20916747 Physarum melleum 289959 Evosea other_Eukaryota 422 1.44e-113   NTclustered gi|380864315|gb|JQ277926.1| 289959 g44367 i0 98.739 3.60995850622407 238 1 99 2 4 241 955 720 Physarum melleum 18S ribosomal RNA gene, partial sequence blastn 870 422 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Physaraceae Physarum Physarum melleum
16977025 16977025 PRJNA376117_P_NODE_12934_length_378_cov_1.836066_g12632_i0 PRJNA376117 12934 378 1.836066 6.94032948 Soliformovum irregulare 435424 Evosea other_Eukaryota 235 3.3299999999999995e-57   NTclustered gi|146448863|gb|EF513199.1| 435424 g12632 i0 77.926 96.5952380952381 376 83 99 0 3 378 693 1068 Soliformovum irregulare elongation factor 1A (EF1A) gene, partial cds blastn 36513 235 1 Eukaryota Amoebozoa   Evosea Variosea Fractovitellida Soliformoviidae Soliformovum Soliformovum irregulare

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;