RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA376117" and tax_phylum = "Apicomplexa"

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tax_superkingdom 1

tax_phylum 1

  • Apicomplexa · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA376117 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
24025455 24025455 PRJNA376117_P_NODE_31539_length_259_cov_1.575269_g31237_i0 PRJNA376117 31539 259 1.575269 4.07994671 Plasmodium 5820 SAR_Eukaryotes SAR_Eukaryotes 52.8 0.024   NTclustered gi|1084921234|ref|XM_018787997.1| 647221 g31237 i0 100 0.216216216216216 28 0 11 0 10 37 1061 1034 Plasmodium gaboni putative exodeoxyribonuclease III partial mRNA blastn 56 52.8 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium gaboni
24626119 24626119 PRJNA376117_P_NODE_29300_length_267_cov_2.149485_g28998_i0 PRJNA376117 29300 267 2.149485 5.73912495 Theileria orientalis 68886 SAR_Eukaryotes SAR_Eukaryotes 52.8 0.024   NTclustered gi|697894472|ref|XM_009694180.1| 869250 g28998 i0 100 0.104868913857678 28 0 10 0 10 37 1908 1881 Theileria orientalis strain Shintoku conserved hypothetical protein partial mRNA blastn 28 52.8 1 Eukaryota Sar   Apicomplexa Aconoidasida Piroplasmida Theileriidae Theileria Theileria orientalis
25299933 25299933 PRJNA376117_P_NODE_32280_length_256_cov_1.683060_g31978_i0 PRJNA376117 32280 256 1.68306 4.3086336 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 56.5 0.002   NTclustered gi|820700576|tpe|LN714500.1| 432359 g31978 i0 94.444 11.27734375 36 2 14 0 220 255 5085201 5085166 TPA_asm: Toxoplasma gondii VEG, chromosome chrX, complete genome blastn 2887 56.5 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Sarcocystidae Toxoplasma Toxoplasma gondii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;