RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA376117" and tax_phylum = "Acidobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Acidobacteriota · 6 ✖

tax_kingdom 1

bioproject 1

  • PRJNA376117 · 6 ✖

analysis 1

  • blastn · 6 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6777407 6777407 PRJNA376117_P_NODE_19546_length_312_cov_3.096234_g19244_i0 PRJNA376117 19546 312 3.096234 9.66025008 uncultured Acidobacteriota bacterium 171953 Bacteria Bacteria 518 2.39e-142   NTclustered gi|112980846|gb|DQ829650.1| 171953 g19244 i0 96.774 102.842948717949 310 10 99 0 1 310 402 711 Uncultured Acidobacteria bacterium clone DON11 23S ribosomal RNA gene, partial sequence blastn 32087 518 1 Bacteria   Pseudomonadati Acidobacteriota         uncultured Acidobacteriota bacterium
8052949 8052949 PRJNA376117_P_NODE_17887_length_327_cov_1.003937_g17585_i0 PRJNA376117 17887 327 1.003937 3.28287399 Acidobacteriota bacterium 1978231 Bacteria Bacteria 532 9.009999999999999e-147   NTclustered gi|1958085512|gb|CP065000.1| 1978231 g17585 i0 96.865 154.865443425076 319 9 98 1 9 327 3299329 3299012 Acidobacteria bacterium isolate Kalu_18-Q3-R12-55_MAXAC.078_cln chromosome, complete genome blastn 50641 532 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
13153560 13153560 PRJNA376117_P_NODE_22771_length_290_cov_1.419355_g22469_i0 PRJNA376117 22771 290 1.419355 4.1161295 Acidobacteriota bacterium 1978231 Bacteria Bacteria 339 1.84e-88   NTclustered gi|1958093598|gb|CP065003.1| 1978231 g22469 i0 88.153 99.5034482758621 287 31 98 3 1 284 317277 317563 Acidobacteria bacterium isolate Kalu_18-Q3-R12-55_MAXAC.185_cln chromosome, complete genome blastn 28856 339 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
13153752 13153752 PRJNA376117_P_NODE_36431_length_249_cov_0.875000_g36129_i0 PRJNA376117 36431 249 0.875 2.17875 Acidobacteriota bacterium 1978231 Bacteria Bacteria 350 7.14e-92   NTclustered gi|1958093598|gb|CP065003.1| 1978231 g36129 i0 91.968 241.208835341365 249 20 100 0 1 249 320856 320608 Acidobacteria bacterium isolate Kalu_18-Q3-R12-55_MAXAC.185_cln chromosome, complete genome blastn 60061 350 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
22076314 22076314 PRJNA376117_P_NODE_23838_length_286_cov_2.154930_g23536_i0 PRJNA376117 23838 286 2.15493 6.1630998 Vicinamibacterales bacterium 2910147 Bacteria Bacteria 65.8 3.4e-6   NTclustered gi|2891481964|emb|OZ219745.1| 2910147 g23536 i0 81.111 0.706293706293706 90 9 30 8 156 241 6285369 6285454 MAG: Vicinamibacterales bacterium isolate d5a9b4ee-eb88-4731-bb2c-80bf662b4d04 genome assembly, chromosome: 2 blastn 202 65.8 1 Bacteria   Pseudomonadati Acidobacteriota Vicinamibacteria Vicinamibacterales     Vicinamibacterales bacterium
22750544 22750544 PRJNA376117_P_NODE_29658_length_266_cov_1.595855_g29356_i0 PRJNA376117 29658 266 1.595855 4.2449743 Pseudomonadati 3379134 Bacteria Bacteria 56.5 0.002   NTclustered gi|321161386|gb|CP002480.1| 1198114 g29356 i0 100 1.24812030075188 30 0 17 0 139 168 1030149 1030120 Granulicella tundricola MP5ACTX9, complete genome blastn 332 56.5 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Terriglobales Acidobacteriaceae Granulicella Granulicella tundricola

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;