RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA376117" and tax_clade = "Bacteria candidate phyla"

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tax_superkingdom 1

tax_clade 1

  • Bacteria candidate phyla · 3 ✖

bioproject 1

  • PRJNA376117 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1674607 1674607 PRJNA376117_P_NODE_32202_length_256_cov_4.333333_g31900_i0 PRJNA376117 32202 256 4.333333 11.09333248 Candidatus Saccharimonadota bacterium 2026720 Bacteria Bacteria 344 3.43e-90   NTclustered gi|1958070929|gb|CP064991.1| 2026720 g31900 i0 91.016 38.046875 256 22 100 1 1 256 87069 87323 Candidatus Saccharibacteria bacterium isolate Hirt_18-Q3-R61-65_BAT3C.362_fly chromosome, complete genome blastn 9740 344 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota         Candidatus Saccharimonadota bacterium
13153917 13153917 PRJNA376117_P_NODE_6651_length_521_cov_1.026786_g6350_i0 PRJNA376117 6651 521 1.026786 5.34955506 uncultured Methylomirabilota bacterium 991135 Bacteria Bacteria 412 2.0299999999999998e-110   NTclustered gi|2874253892|emb|OY970067.1| 991135 g6350 i0 81.333 297.73320537428 525 82 99 12 5 520 4745606 4746123 MAG: uncultured candidate division NC10 bacterium isolate MFD01231.bin.c.1 genome assembly, chromosome: 1 blastn 155119 412 1 Bacteria Bacteria candidate phyla   Candidatus Methylomirabilota         uncultured Methylomirabilota bacterium
24626134 24626134 PRJNA376117_P_NODE_30240_length_264_cov_1.361257_g29938_i0 PRJNA376117 30240 264 1.361257 3.59371848 Candidatus Nanogingivalaceae bacterium 2725942 Bacteria Bacteria 477 3.359999999999999e-130   NTclustered gi|2070571752|gb|CP072208.2| 2725942 g29938 i0 99.242 90.7348484848485 264 2 100 0 1 264 112401 112664 MAG: Candidatus Nanogingivalaceae bacterium isolate JCVI_27_bin.3 chromosome, complete genome blastn 23954 477 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota Candidatus Nanosyncoccalia Candidatus Nanogingivales Candidatus Nanogingivalaceae   Candidatus Nanogingivalaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;