RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

20 rows where analysis = "blastn", bioproject = "PRJNA376117" and tax_clade = "Amoebozoa"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_phylum 3

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 20 ✖

bioproject 1

  • PRJNA376117 · 20 ✖

analysis 1

  • blastn · 20 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2950464 2950464 PRJNA376117_P_NODE_26843_length_276_cov_1.896552_g26541_i0 PRJNA376117 26843 276 1.896552 5.23448352 Mayorella sp. JJP-2003 242541 Discosea other_Eukaryota 416 7.809999999999998e-112   NTclustered gi|33946346|gb|AY294152.1| 242541 g26541 i0 93.841 103.101449275362 276 17 100 0 1 276 662 387 Mayorella sp. JJP-2003 actin mRNA, partial cds blastn 28456 416 1 Eukaryota Amoebozoa   Discosea   Longamoebia   Mayorella Mayorella sp. JJP-2003
4227340 4227340 PRJNA376117_P_NODE_7864_length_478_cov_1.439506_g7563_i0 PRJNA376117 7864 478 1.439506 6.88083868 Mayorella sp. JJP-2003 242541 Discosea other_Eukaryota 728 0   NTclustered gi|33946346|gb|AY294152.1| 242541 g7563 i0 94.142 98.4832635983264 478 28 100 0 1 478 920 443 Mayorella sp. JJP-2003 actin mRNA, partial cds blastn 47075 728 1 Eukaryota Amoebozoa   Discosea   Longamoebia   Mayorella Mayorella sp. JJP-2003
4227360 4227360 PRJNA376117_P_NODE_9704_length_432_cov_1.211699_g9402_i0 PRJNA376117 9704 432 1.211699 5.23453968 Vexillifera bacillipedes 1105345 Discosea other_Eukaryota 750 0   NTclustered gi|399764261|gb|JQ271772.1| 1105345 g9402 i0 98.152 73.8518518518518 433 3 99 3 2 432 687 258 Vexillifera bacillipedes strain 6HZM 18S ribosomal RNA gene, partial sequence blastn 31904 750 1 Eukaryota Amoebozoa   Discosea Flabellinia Dactylopodida Vexilliferidae Vexillifera Vexillifera bacillipedes
5503232 5503232 PRJNA376117_P_NODE_12025_length_390_cov_2.154574_g11723_i0 PRJNA376117 12025 390 2.154574 8.4028386 Saccamoeba lacustris 704142 Tubulinea other_Eukaryota 660 0   NTclustered gi|423292025|gb|JQ519458.1| 704142 g11723 i0 97.179 100.348717948718 390 11 100 0 1 390 740 351 Saccamoeba lacustris clone JG10.115_b9 actin gene, partial cds blastn 39136 660 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Saccamoeba Saccamoeba lacustris
7451721 7451721 PRJNA376117_P_NODE_38866_length_246_cov_1.427746_g38564_i0 PRJNA376117 38866 246 1.427746 3.51225516 Vannellidae 95227 Discosea other_Eukaryota 414 2.46e-111   NTclustered gi|399764202|gb|JQ271713.1| 1217113 g38564 i0 97.908 96.8211382113821 239 5 97 0 1 239 1477 1239 Ripella sp. 805 18S ribosomal RNA gene, partial sequence blastn 23818 414 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Ripella Ripella sp. 805
8726398 8726398 PRJNA376117_P_NODE_31947_length_257_cov_3.211957_g31645_i0 PRJNA376117 31947 257 3.211957 8.25472949 Flabellulidae 136457 Tubulinea other_Eukaryota 431 2.57e-116   NTclustered gi|30721610|gb|AY277797.1| 136459 g31645 i0 96.887 98.3618677042802 257 8 100 0 1 257 1093 837 Paraflabellula hoguae 18S ribosomal RNA gene, partial sequence blastn 25279 431 1 Eukaryota Amoebozoa   Tubulinea Elardia Leptomyxida Flabellulidae Paraflabellula Paraflabellula hoguae
10603885 10603885 PRJNA376117_P_NODE_44669_length_241_cov_0.916667_g44367_i0 PRJNA376117 44669 241 0.916667 2.20916747 Physarum melleum 289959 Evosea other_Eukaryota 422 1.44e-113   NTclustered gi|380864315|gb|JQ277926.1| 289959 g44367 i0 98.739 3.60995850622407 238 1 99 2 4 241 955 720 Physarum melleum 18S ribosomal RNA gene, partial sequence blastn 870 422 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Physaraceae Physarum Physarum melleum
10603908 10603908 PRJNA376117_P_NODE_5329_length_590_cov_2.220503_g5033_i0 PRJNA376117 5329 590 2.220503 13.1009677 Mayorella sp. JJP-2003 242541 Discosea other_Eukaryota 791 0   NTclustered gi|33946346|gb|AY294152.1| 242541 g5033 i0 93.738 93.4440677966102 527 33 89 0 64 590 1131 605 Mayorella sp. JJP-2003 actin mRNA, partial cds blastn 55132 791 1 Eukaryota Amoebozoa   Discosea   Longamoebia   Mayorella Mayorella sp. JJP-2003
11878391 11878391 PRJNA376117_P_NODE_14610_length_358_cov_2.985965_g14308_i0 PRJNA376117 14610 358 2.985965 10.6897547 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 278 5.14e-70   NTclustered gi|470442906|ref|XM_004339540.1| 1257118 g14308 i0 83.168 18.4329608938547 303 51 85 0 11 313 315 13 Acanthamoeba castellanii str. Neff 60S ribosomal protein, putative (ACA1_063390), partial mRNA blastn 6599 278 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
13153555 13153555 PRJNA376117_P_NODE_22491_length_291_cov_2.825688_g22189_i0 PRJNA376117 22491 291 2.825688 8.22275208 Mayorella sp. JJP-2003 242541 Discosea other_Eukaryota 366 8.48e-97   NTclustered gi|33946346|gb|AY294152.1| 242541 g22189 i0 89.347 87.6185567010309 291 31 100 0 1 291 764 474 Mayorella sp. JJP-2003 actin mRNA, partial cds blastn 25497 366 1 Eukaryota Amoebozoa   Discosea   Longamoebia   Mayorella Mayorella sp. JJP-2003
14428922 14428922 PRJNA376117_P_NODE_9632_length_433_cov_1.827778_g9330_i0 PRJNA376117 9632 433 1.827778 7.91427874 Ripella decalvata 2047822 Discosea other_Eukaryota 693 0   NTclustered gi|1269228437|gb|MF683562.1| 2047822 g9330 i0 95.853 99.6697459584296 434 9 99 7 1 428 1045 615 Ripella decalvata clone 15101 18S ribosomal RNA gene, partial sequence blastn 43157 693 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Ripella Ripella decalvata
16977025 16977025 PRJNA376117_P_NODE_12934_length_378_cov_1.836066_g12632_i0 PRJNA376117 12934 378 1.836066 6.94032948 Soliformovum irregulare 435424 Evosea other_Eukaryota 235 3.3299999999999995e-57   NTclustered gi|146448863|gb|EF513199.1| 435424 g12632 i0 77.926 96.5952380952381 376 83 99 0 3 378 693 1068 Soliformovum irregulare elongation factor 1A (EF1A) gene, partial cds blastn 36513 235 1 Eukaryota Amoebozoa   Evosea Variosea Fractovitellida Soliformoviidae Soliformovum Soliformovum irregulare
16977367 16977367 PRJNA376117_P_NODE_37434_length_248_cov_0.880000_g37132_i0 PRJNA376117 37434 248 0.88 2.1824 Dermamoeba algensis 242549 Discosea other_Eukaryota 263 9.519999999999998e-66   NTclustered gi|33946360|gb|AY294159.1| 242549 g37132 i0 86.555 96.1854838709677 238 32 96 0 4 241 81 318 Dermamoeba algensis actin mRNA, partial cds blastn 23854 263 1 Eukaryota Amoebozoa   Discosea   Longamoebia   Dermamoeba Dermamoeba algensis
16977410 16977410 PRJNA376117_P_NODE_40254_length_245_cov_0.895349_g39952_i0 PRJNA376117 40254 245 0.895349 2.19360505 Mayorella sp. JJP-2003 242541 Discosea other_Eukaryota 340 4.209999999999999e-89   NTclustered gi|33946346|gb|AY294152.1| 242541 g39952 i0 91.803 84.2571428571429 244 20 99 0 1 244 622 865 Mayorella sp. JJP-2003 actin mRNA, partial cds blastn 20643 340 1 Eukaryota Amoebozoa   Discosea   Longamoebia   Mayorella Mayorella sp. JJP-2003
18251300 18251300 PRJNA376117_P_NODE_1375_length_1426_cov_9.886918_g1193_i0 PRJNA376117 1375 1426 9.886918 140.98745068 Copromyxa protea 931554 Tubulinea other_Eukaryota 1236 0   NTclustered gi|508737347|dbj|AB766053.1| 931554 g1193 i0 82.925 35.6199158485273 1388 222 96 11 16 1391 1 1385 Copromyxa protea EFL mRNA for elongation factor-like protein, complete cds, strain: ATCC PRA-324 blastn 50794 1236 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Copromyxa Copromyxa protea
18251790 18251790 PRJNA376117_P_NODE_6015_length_550_cov_1.129979_g5715_i0 PRJNA376117 6015 550 1.129979 6.2148845 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 475 2.7099999999999994e-129   NTclustered gi|470420395|ref|XM_004337241.1| 1257118 g5715 i0 82.482 97.28 548 90 99 6 1 545 2339 1795 Acanthamoeba castellanii str. Neff eukaryotic translation elongation factor 2, putative (ACA1_220140), partial mRNA blastn 53504 475 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
19525623 19525623 PRJNA376117_P_NODE_20816_length_303_cov_1.165217_g20514_i0 PRJNA376117 20816 303 1.165217 3.53060751 Mayorella sp. JJP-2003 242541 Discosea other_Eukaryota 361 4.13e-95   NTclustered gi|33946346|gb|AY294152.1| 242541 g20514 i0 95.197 81.2937293729373 229 9 75 2 76 303 1134 907 Mayorella sp. JJP-2003 actin mRNA, partial cds blastn 24632 361 1 Eukaryota Amoebozoa   Discosea   Longamoebia   Mayorella Mayorella sp. JJP-2003
20801185 20801185 PRJNA376117_P_NODE_17417_length_330_cov_6.614786_g17115_i0 PRJNA376117 17417 330 6.614786 21.8287938 Rhizamoeba saxonica 200886 Tubulinea other_Eukaryota 305 2.16e-78   NTclustered gi|300078497|gb|GU001159.1| 200886 g17115 i0 90.336 73.030303030303 238 16 72 6 93 330 3747 3977 Rhizamoeba saxonica 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 24100 305 1 Eukaryota Amoebozoa   Tubulinea Elardia Leptomyxida Flabellulidae Rhizamoeba Rhizamoeba saxonica
23351639 23351639 PRJNA376117_P_NODE_1399_length_1412_cov_9.300224_g1193_i1 PRJNA376117 1399 1412 9.300224 131.31916288 Copromyxa protea 931554 Tubulinea other_Eukaryota 1260 0   NTclustered gi|508737347|dbj|AB766053.1| 931554 g1193 i1 83.225 35.0148725212465 1389 218 98 11 16 1392 1 1386 Copromyxa protea EFL mRNA for elongation factor-like protein, complete cds, strain: ATCC PRA-324 blastn 49441 1260 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Copromyxa Copromyxa protea
23351929 23351929 PRJNA376117_P_NODE_34639_length_250_cov_1.644068_g34337_i0 PRJNA376117 34639 250 1.644068 4.11017 Vannella septentrionalis 197531 Discosea other_Eukaryota 436 5.349999999999999e-118   NTclustered gi|300078499|gb|GU001161.1| 197531 g34337 i0 98.024 61.136 253 2 100 1 1 250 2619 2871 Vannella septentrionalis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 15284 436 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella septentrionalis

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;