RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA371613" and tax_kingdom = "Thermotogati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Thermotogati · 5 ✖

bioproject 1

  • PRJNA371613 · 5 ✖

analysis 1

  • blastn · 5 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6176490 6176490 PRJNA371613_P_NODE_6365_length_183_cov_1.335616_g6189_i0 PRJNA371613 6365 183 1.335616 2.44417728 Deinococcus 1298 Bacteria Bacteria 263 6.61e-66   NTclustered gi|545345238|gb|KF508470.1| 158789 g6189 i0 93.048 98.2404371584699 187 2 100 7 1 183 287 466 Uncultured Deinococcus sp. clone 8187 16S ribosomal RNA gene, partial sequence blastn 17978 263 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus uncultured Deinococcus sp.
7451432 7451432 PRJNA371613_P_NODE_9086_length_162_cov_2.272000_g8910_i0 PRJNA371613 9086 162 2.272 3.68064 Deinococcus 1298 Bacteria Bacteria 289 9.44e-74   NTclustered gi|470486828|ref|NR_076782.1| 502394 g8910 i0 98.765 202.666666666667 162 2 100 0 1 162 1270 1431 Deinococcus gobiensis strain I-0 23S ribosomal RNA gene, complete sequence blastn 32832 289 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus gobiensis
14428333 14428333 PRJNA371613_P_NODE_7492_length_170_cov_1.248120_g7316_i0 PRJNA371613 7492 170 1.24812 2.121804 Deinococcus ficus 317577 Bacteria Bacteria 276 7.75e-70   NTclustered gi|1220362168|gb|CP021081.1| 317577 g7316 i0 95.906 150.970588235294 171 6 100 1 1 170 2341554 2341384 Deinococcus ficus strain CC-FR2-10, complete genome blastn 25665 276 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus ficus
15101326 15101326 PRJNA371613_P_NODE_892_length_686_cov_4.685670_g745_i0 PRJNA371613 892 686 4.68567 32.1436962 Deinococcus 1298 Bacteria Bacteria 1112 0   NTclustered gi|2581867323|gb|OR600233.1| 47478 g745 i0 96.716 101.628279883382 670 19 98 3 17 686 217 883 Deinococcus sp. strain RM 16S ribosomal RNA gene, partial sequence blastn 69717 1112 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus sp.
25299671 25299671 PRJNA371613_P_NODE_2560_length_353_cov_2.189873_g2384_i0 PRJNA371613 2560 353 2.189873 7.73025169 Deinococcus 1298 Bacteria Bacteria 619 7.299999999999999e-173   NTclustered gi|1751871007|dbj|AP021849.1| 57498 g2384 i0 98.3 210.682719546742 353 6 100 0 1 353 74203 74555 Deinococcus grandis ATCC 43672 DNA, complete genome blastn 74371 625 0.9904 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus grandis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;