RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA371613" and tax_clade = "Discoba"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Discoba · 3 ✖

bioproject 1

  • PRJNA371613 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7451435 7451435 PRJNA371613_P_NODE_9346_length_158_cov_3.057851_g9170_i0 PRJNA371613 9346 158 3.057851 4.83140458 Entosiphon 101492 Euglenozoa other_Eukaryota 178 2.07e-40   NTclustered gi|41400272|gb|AY425008.1| 259048 g9170 i0 96.296 54.120253164557 108 4 68 0 50 157 1474 1581 Entosiphon sp. TCS-2003 18S ribosomal RNA gene, partial sequence blastn 8551 178 1 Eukaryota Discoba   Euglenozoa Euglenida Heteronematales Peranemataceae Entosiphon Entosiphon sp. TCS 2003
19525406 19525406 PRJNA371613_P_NODE_7796_length_169_cov_0.969697_g7620_i0 PRJNA371613 7796 169 0.969697 1.63878793 uncultured Peranema sp. 1980988 Euglenozoa other_Eukaryota 296 5.9e-76   NTclustered gi|1182637172|gb|KY963139.1| 1980988 g7620 i0 98.225 80.7159763313609 169 2 100 1 1 169 1296 1463 Uncultured Peranema sp. clone SP1 small subunit ribosomal RNA gene, partial sequence blastn 13641 296 1 Eukaryota Discoba   Euglenozoa Euglenida       uncultured Peranema sp.
23351533 23351533 PRJNA371613_P_NODE_3559_length_276_cov_1.071130_g3383_i0 PRJNA371613 3559 276 1.07113 2.9563188 Entosiphon sp. 1921133 Euglenozoa other_Eukaryota 313 1.05e-80   NTclustered gi|1547024950|gb|MK213406.1| 1921133 g3383 i0 87.097 54.3768115942029 279 32 100 3 1 276 681 404 Entosiphon sp. strain ESC small subunit ribosomal RNA, partial sequence blastn 15008 313 1 Eukaryota Discoba   Euglenozoa Euglenida Heteronematales Peranemataceae Entosiphon Entosiphon sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;