RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA358490" and tax_phylum = "Heterolobosea"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Heterolobosea · 6 ✖

tax_clade 1

bioproject 1

  • PRJNA358490 · 6 ✖

analysis 1

  • blastn · 6 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2949629 2949629 PRJNA358490_P_NODE_2663_length_878_cov_3.203814_g2483_i0 PRJNA358490 2663 878 3.203814 28.12948692 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 907 0   NTclustered gi|291001644|ref|XM_002683343.1| 5762 g2483 i0 88.01 4.97380410022779 784 73 88 17 88 862 58 829 Naegleria gruberi ribosomal protein S5 (NAEGRDRAFT_55960), mRNA blastn 4367 907 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
8052362 8052362 PRJNA358490_P_NODE_6807_length_497_cov_2.563319_g6476_i0 PRJNA358490 6807 497 2.563319 12.73969543 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 510 6.659999999999998e-140   NTclustered gi|290987530|ref|XM_002676430.1| 5762 g6476 i0 90.814 19.261569416499 381 35 83 0 85 465 66 446 Naegleria gruberi uncharacterized protein (NAEGRDRAFT_55800), mRNA blastn 9573 510 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
16976504 16976504 PRJNA358490_P_NODE_6874_length_492_cov_4.262693_g6542_i0 PRJNA358490 6874 492 4.262693 20.97244956 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 708 0   NTclustered gi|290988985|ref|XM_002677104.1| 5762 g6542 i0 94.934 0.922764227642276 454 20 92 1 42 492 1 454 Naegleria gruberi uncharacterized protein (NAEGRDRAFT_58080), partial mRNA blastn 454 708 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
18250759 18250759 PRJNA358490_P_NODE_7175_length_475_cov_4.924312_g6842_i0 PRJNA358490 7175 475 4.924312 23.390482 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 580 4.77e-161   NTclustered gi|290987344|ref|XM_002676337.1| 5762 g6842 i0 89.27 0.981052631578947 466 46 98 3 5 470 6 467 Naegleria gruberi uncharacterized protein (NAEGRDRAFT_39417), mRNA blastn 466 580 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
19524801 19524801 PRJNA358490_P_NODE_14896_length_184_cov_1.393103_g14552_i0 PRJNA358490 14896 184 1.393103 2.56330952 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 252 1.44e-62   NTclustered gi|290985037|ref|XM_002675187.1| 5762 g14552 i0 91.713 2.98369565217391 181 15 98 0 1 181 35 215 Naegleria gruberi 40S ribosomal protein S13 (NAEGRDRAFT_58574), mRNA blastn 549 252 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
20800584 20800584 PRJNA358490_P_NODE_5977_length_546_cov_3.124260_g5663_i0 PRJNA358490 5977 546 3.12426 17.0584596 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 815 0   NTclustered gi|290999450|ref|XM_002682247.1| 5762 g5663 i0 96.185 3.28754578754579 498 19 91 0 1 498 498 1 Naegleria gruberi uncharacterized protein (NAEGRDRAFT_35035), partial mRNA blastn 1795 815 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;