RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA358490" and tax_phylum = "Gemmatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 6 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA358490 · 6 ✖

analysis 1

  • blastn · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2949736 2949736 PRJNA358490_P_NODE_9003_length_387_cov_1.893678_g8662_i0 PRJNA358490 9003 387 1.893678 7.32853386 Gaopeijia maritima 3119007 Bacteria Bacteria 311 5.52e-80   NTclustered gi|2716997671|gb|CP144380.1| 3119007 g8662 i0 82.609 112.067183462532 368 48 93 15 1 359 1346712 1347072 Gaopeijia maritima strain DH-78 chromosome, complete genome blastn 43370 311 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Gaopeijiales Gaopeijiaceae Gaopeijia Gaopeijia maritima
11877738 11877738 PRJNA358490_P_NODE_3590_length_754_cov_2.030769_g3366_i0 PRJNA358490 3590 754 2.030769 15.31199826 Longimicrobiales bacterium 2910168 Bacteria Bacteria 196 3.3e-45   NTclustered gi|2893358411|emb|OZ220702.1| 2910168 g3366 i0 85.417 6.64721485411141 192 25 25 3 1 191 3230868 3231057 MAG: Longimicrobiales bacterium isolate 5c038fdb-8e0b-4cbd-9550-43be1afc0bbf genome assembly, chromosome: 1 blastn 5012 196 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales     Longimicrobiales bacterium
13152882 13152882 PRJNA358490_P_NODE_9331_length_368_cov_2.793313_g8989_i0 PRJNA358490 9331 368 2.793313 10.27939184 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 259 1.92e-64   NTclustered gi|2874253938|emb|OY970263.1| 412054 g8989 i0 81.935 1.69836956521739 310 53 84 3 40 347 2821196 2820888 MAG: uncultured Gemmatimonadales bacterium isolate MFD02416.bin.2.26 genome assembly, chromosome: 1 blastn 625 259 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
14427734 14427734 PRJNA358490_P_NODE_13412_length_211_cov_1.395349_g13068_i0 PRJNA358490 13412 211 1.395349 2.94418639 Pseudogemmatithrix spongiicola 3062599 Bacteria Bacteria 147 8.26e-31   NTclustered gi|2557479348|gb|CP130613.1| 3062599 g13068 i0 84.314 12.7867298578199 153 21 72 3 60 211 52826 52676 Pseudogemmatithrix spongiicola strain 318 chromosome, complete genome blastn 2698 147 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Pseudogemmatithrix Pseudogemmatithrix spongiicola
15701682 15701682 PRJNA358490_P_NODE_1613_length_1086_cov_3.439351_g1491_i0 PRJNA358490 1613 1086 3.439351 37.35135186 Gemmatirosa kalamazoonensis 861299 Bacteria Bacteria 721 0   NTclustered gi|575461033|gb|CP007129.1| 861299 g1491 i0 81.705 8.20810313075506 880 147 80 12 193 1065 617926 618798 Gemmatirosa kalamazoonesis strain KBS708 plasmid 1, complete sequence blastn 8914 721 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatirosa Gemmatirosa kalamazoonensis
23350936 23350936 PRJNA358490_P_NODE_14759_length_186_cov_1.367347_g14415_i0 PRJNA358490 14759 186 1.367347 2.54326542 Gemmatimonas groenlandica 2732249 Bacteria Bacteria 122 1.19e-23   NTclustered gi|1839994010|gb|CP053085.1| 2732249 g14415 i0 79.882 1.05913978494624 169 32 90 2 19 186 2508207 2508040 Gemmatimonas groenlandica strain TET16 chromosome, complete genome blastn 197 122 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatimonas Gemmatimonas groenlandica

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;