RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA358490" and tax_kingdom = "Orthornavirae"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_phylum 2

tax_superkingdom 1

tax_kingdom 1

  • Orthornavirae · 3 ✖

bioproject 1

  • PRJNA358490 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2949540 2949540 PRJNA358490_P_NODE_13143_length_217_cov_2.719101_g12799_i0 PRJNA358490 13143 217 2.719101 5.90044917 Carlavirus latensallii 3427762 Viruses Viruses 351 1.69e-92   NTclustered gi|1722559511|gb|MN059109.1| 47900 g12799 i0 98.98 45.7142857142857 196 2 90 0 22 217 8387 8582 Garlic common latent virus isolate G35, complete genome blastn 9920 351 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Betaflexiviridae Carlavirus Carlavirus latensallii
16976329 16976329 PRJNA358490_P_NODE_1194_length_1214_cov_8.765957_g1105_i0 PRJNA358490 1194 1214 8.765957 106.41871798 Bromovirus BMV 3427622 Viruses Viruses 2119 0   NTclustered gi|320091636|gb|GU584129.1| 12302 g1105 i0 98.743 39.4423393739703 1193 13 98 2 23 1214 1 1192 Brome mosaic virus strain BMV-CZ segment RNA3, complete sequence blastn 47883 2119 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Bromoviridae Bromovirus Bromovirus BMV
19524770 19524770 PRJNA358490_P_NODE_13156_length_217_cov_2.089888_g12812_i0 PRJNA358490 13156 217 2.089888 4.53505696 Ripabiq virus 3130194 Viruses Viruses 292 1.04e-74   NTclustered gi|2717319120|gb|PP172496.1| 3130194 g12812 i0 94.271 89.2672811059908 192 10 88 1 5 195 682 491 MAG: Ripabiq virus isolate DRCP1_k141_78731 genomic sequence blastn 19371 292 1 Viruses   Orthornavirae Lenarviricota Leviviricetes       Ripabiq virus

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;