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contig_metadata

20 rows where analysis = "blastn", bioproject = "PRJNA358490" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 20 ✖

bioproject 1

  • PRJNA358490 · 20 ✖

analysis 1

  • blastn · 20 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
398942 398942 PRJNA358490_P_NODE_10541_length_305_cov_6.921053_g10199_i0 PRJNA358490 10541 305 6.921053 21.10921165 Stichococcus bacillaris 37433 Plants Plants 529 1.0799999999999996e-145   NTclustered gi|371782093|emb|HE610125.1| 37433 g10199 i0 100 93.2622950819672 286 0 94 0 1 286 3203 2918 Stichococcus bacillaris 18S rRNA gene (partial), 5.8S rRNA gene, 28S rRNA gene (partial), ITS1 and ITS2, strain SAG 379-2 blastn 28445 529 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Prasiolales Stichococcaceae Stichococcus Stichococcus bacillaris
399129 399129 PRJNA358490_P_NODE_6981_length_486_cov_4.794183_g6649_i0 PRJNA358490 6981 486 4.794183 23.29972938 Trebouxia sp. SL0000003 3350044 Plants Plants 99 6e-16   NTclustered gi|2917929806|emb|OZ234924.1| 3350044 g6649 i0 82.456 0.234567901234568 114 19 23 1 1 113 618902 618789 Trebouxia sp. SL0000003 genome assembly, chromosome: 19 blastn 114 99 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia sp. SL0000003
4226116 4226116 PRJNA358490_P_NODE_12244_length_243_cov_1.745098_g11900_i0 PRJNA358490 12244 243 1.745098 4.24058814 uncultured Chlamydomonadales 341166 Plants Plants 302 1.97e-77   NTclustered gi|2006881308|emb|HG996264.1| 341166 g11900 i0 89.256 99.5020576131687 242 24 99 2 1 241 934 694 uncultured Chlamydomonadales genomic DNA sequence contains 18S rRNA gene, ITS1, 5.8S rRNA gene, ITS2, 28S rRNA gene, clone d9c15149 blastn 24179 302 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales     uncultured Chlamydomonadales
6776614 6776614 PRJNA358490_P_NODE_146_length_2289_cov_4.738222_g130_i0 PRJNA358490 146 2289 4.738222 108.45790158 Stichococcus bacillaris 37433 Plants Plants 4178 0   NTclustered gi|723457333|ref|NC_025527.1| 37433 g130 i0 99.868 51.9598077763215 2273 0 99 2 1 2270 30493 28221 Stichococcus bacillaris culture-collection UTEX:176 chloroplast, complete genome blastn 118936 4178 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Prasiolales Stichococcaceae Stichococcus Stichococcus bacillaris
7451100 7451100 PRJNA358490_P_NODE_12966_length_222_cov_3.278689_g12622_i0 PRJNA358490 12966 222 3.278689 7.27868958 Trebouxiophyceae 75966 Plants Plants 274 3.86e-69   NTclustered gi|2724824453|gb|PP746560.1| 173497 g12622 i0 91.089 89.2117117117117 202 18 91 0 1 202 2324 2123 Pseudochlorella signiensis culture SAG:7.90 mitochondrion, complete genome blastn 19805 274 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Pseudochlorella Pseudochlorella signiensis
9327199 9327199 PRJNA358490_P_NODE_5188_length_602_cov_2.751332_g4901_i0 PRJNA358490 5188 602 2.751332 16.56301864 Volvox carteri 3067 Plants Plants 128 9.63e-25   NTclustered gi|302853011|ref|XM_002957977.1| 3068 g4901 i0 82.877 0.365448504983389 146 21 24 4 96 239 38 181 Volvox carteri f. nagariensis component of cytosolic 80S ribosome and 60S large subunit (rpl28), mRNA blastn 220 128 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Volvocaceae Volvox Volvox carteri
10602661 10602661 PRJNA358490_P_NODE_10189_length_323_cov_3.366197_g9847_i0 PRJNA358490 10189 323 3.366197 10.87281631 Koliella longiseta 33092 Plants Plants 305 2.11e-78   NTclustered gi|2724824530|gb|PP746562.1| 33092 g9847 i0 85.235 2.81733746130031 298 43 92 1 20 316 48056 48353 Koliella longiseta culture UTEX:339 mitochondrion, complete genome blastn 910 305 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Prasiolales Koliellaceae Koliella Koliella longiseta
10602676 10602676 PRJNA358490_P_NODE_10969_length_288_cov_3.879518_g10627_i0 PRJNA358490 10969 288 3.879518 11.17301184 Myrmecia israelensis 3171 Plants Plants 111 4.33e-20   NTclustered gi|2724824566|gb|PP746563.1| 3171 g10627 i0 91.358 5.19097222222222 81 7 28 0 82 162 2787 2867 Myrmecia israelensis culture UTEX:1181 mitochondrion, complete genome blastn 1495 111 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Myrmecia Myrmecia israelensis
10602766 10602766 PRJNA358490_P_NODE_17669_length_155_cov_1.741379_g17325_i0 PRJNA358490 17669 155 1.741379 2.69913745 Trebouxia sp. SL0000003 3350044 Plants Plants 215 1.54e-51   NTclustered gi|2917929690|emb|OZ234918.1| 3350044 g17325 i0 91.613 1 155 13 100 0 1 155 2272917 2273071 Trebouxia sp. SL0000003 genome assembly, chromosome: 13 blastn 155 215 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia sp. SL0000003
13152622 13152622 PRJNA358490_P_NODE_10151_length_325_cov_4.531469_g9809_i0 PRJNA358490 10151 325 4.531469 14.72727425 Stichococcus bacillaris 37433 Plants Plants 595 1.1299999999999995e-165   NTclustered gi|723457333|ref|NC_025527.1| 37433 g9809 i0 99.693 89.3815384615385 326 0 100 1 1 325 75413 75738 Stichococcus bacillaris culture-collection UTEX:176 chloroplast, complete genome blastn 29049 595 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Prasiolales Stichococcaceae Stichococcus Stichococcus bacillaris
13152648 13152648 PRJNA358490_P_NODE_12051_length_248_cov_5.220096_g11707_i0 PRJNA358490 12051 248 5.220096 12.94583808 Stichococcus bacillaris 37433 Plants Plants 383 7.0000000000000005e-102   NTclustered gi|371782130|emb|HE610162.1| 37433 g11707 i0 96.943 110.895161290323 229 5 92 2 1 228 1040 813 Stichococcus bacillaris plastid partial 23S rRNA gene, strain SAG 379-2 blastn 27502 383 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Prasiolales Stichococcaceae Stichococcus Stichococcus bacillaris
14427714 14427714 PRJNA358490_P_NODE_12272_length_242_cov_2.295567_g11928_i0 PRJNA358490 12272 242 2.295567 5.55527214 Stichococcus bacillaris 37433 Plants Plants 448 2.3799999999999995e-121   NTclustered gi|723457333|ref|NC_025527.1| 37433 g11928 i0 100 35.099173553719 242 0 100 0 1 242 59638 59879 Stichococcus bacillaris culture-collection UTEX:176 chloroplast, complete genome blastn 8494 448 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Prasiolales Stichococcaceae Stichococcus Stichococcus bacillaris
14427857 14427857 PRJNA358490_P_NODE_5372_length_589_cov_3.576364_g5076_i0 PRJNA358490 5372 589 3.576364 21.06478396 Ulva compressa 63659 Plants Plants 390 1.09e-103   NTclustered gi|2043344467|gb|MW353781.1| 63659 g5076 i0 79.928 113.560271646859 558 91 94 13 30 585 69734 69196 Ulva compressa isolate Uco3 plastid, complete genome blastn 66887 390 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Ulvales Ulvaceae Ulva Ulva compressa
14427898 14427898 PRJNA358490_P_NODE_8512_length_411_cov_5.446237_g8171_i0 PRJNA358490 8512 411 5.446237 22.38403407 Stichococcus bacillaris 37433 Plants Plants 723 0   NTclustered gi|723457333|ref|NC_025527.1| 37433 g8171 i0 100 0.951338199513382 391 0 95 0 1 391 86773 86383 Stichococcus bacillaris culture-collection UTEX:176 chloroplast, complete genome blastn 391 723 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Prasiolales Stichococcaceae Stichococcus Stichococcus bacillaris
16976326 16976326 PRJNA358490_P_NODE_11614_length_263_cov_2.883929_g11270_i0 PRJNA358490 11614 263 2.883929 7.58473327 Stichococcus bacillaris 37433 Plants Plants 449 7.29e-122   NTclustered gi|723457333|ref|NC_025527.1| 37433 g11270 i0 100 0.923954372623574 243 0 92 0 1 243 72016 71774 Stichococcus bacillaris culture-collection UTEX:176 chloroplast, complete genome blastn 243 449 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Prasiolales Stichococcaceae Stichococcus Stichococcus bacillaris
18250598 18250598 PRJNA358490_P_NODE_13795_length_202_cov_4.177914_g13451_i0 PRJNA358490 13795 202 4.177914 8.43938628 uncultured Apatococcus 1229086 Plants Plants 331 2.02e-86   NTclustered gi|1031961072|gb|KX025113.1| 1229086 g13451 i0 99.451 87.3762376237624 182 1 90 0 21 202 1026 1207 Uncultured Apatococcus clone GOGs_K31 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 26S ribosomal RNA gene, partial sequence blastn 17650 331 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae       uncultured Apatococcus
19524894 19524894 PRJNA358490_P_NODE_4816_length_633_cov_3.276094_g4544_i0 PRJNA358490 4816 633 3.276094 20.73767502 Trebouxia lynnae 1825957 Plants Plants 551 5.079999999999998e-152   NTclustered gi|1812100161|ref|NC_045839.1| 1825957 g4544 i0 96.687 85.4533965244866 332 10 76 1 273 603 214706 214375 Trebouxia sp. TR9 chloroplast, partial genome blastn 54092 551 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia lynnae
20800454 20800454 PRJNA358490_P_NODE_13297_length_213_cov_4.109195_g12953_i0 PRJNA358490 13297 213 4.109195 8.75258535 Stichococcus bacillaris 37433 Plants Plants 355 1.28e-93   NTclustered gi|723457333|ref|NC_025527.1| 37433 g12953 i0 100 35.6291079812207 192 0 90 0 22 213 97666 97857 Stichococcus bacillaris culture-collection UTEX:176 chloroplast, complete genome blastn 7589 355 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Prasiolales Stichococcaceae Stichococcus Stichococcus bacillaris
20800596 20800596 PRJNA358490_P_NODE_6717_length_503_cov_1.719828_g6387_i0 PRJNA358490 6717 503 1.719828 8.65073484 Stichococcus bacillaris 37433 Plants Plants 889 0   NTclustered gi|723457333|ref|NC_025527.1| 37433 g6387 i0 100 1.01192842942346 481 0 96 0 21 501 73839 74319 Stichococcus bacillaris culture-collection UTEX:176 chloroplast, complete genome blastn 509 889 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Prasiolales Stichococcaceae Stichococcus Stichococcus bacillaris
22075524 22075524 PRJNA358490_P_NODE_15638_length_174_cov_1.496296_g15294_i0 PRJNA358490 15638 174 1.496296 2.60355504 Auxenochlorella protothecoides 3075 Plants Plants 224 2.93e-54   NTclustered gi|760444702|ref|XM_011401118.1| 3075 g15294 i0 90.533 65.4540229885057 169 16 97 0 1 169 230 398 Auxenochlorella protothecoides 40S ribosomal protein S23-2 partial mRNA blastn 11389 224 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Auxenochlorella Auxenochlorella protothecoides

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;