RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA358490" and tax_clade = "Amoebozoa"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 4 ✖

bioproject 1

  • PRJNA358490 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8052236 8052236 PRJNA358490_P_NODE_15387_length_177_cov_2.021739_g15043_i0 PRJNA358490 15387 177 2.021739 3.57847803 Mastigamoeba balamuthi 108607 Evosea other_Eukaryota 58.4 3.21e-4   NTclustered gi|6006730|gb|AF140033.1|AF140033 108607 g15043 i0 94.737 0.903954802259887 38 1 21 1 1 37 397 434 Phreatamoeba balamuthi histone H3 mRNA, complete cds blastn 160 58.4 1 Eukaryota Amoebozoa   Evosea   Mastigamoebida Mastigamoebidae Mastigamoeba Mastigamoeba balamuthi
11877685 11877685 PRJNA358490_P_NODE_16350_length_166_cov_2.984252_g16006_i0 PRJNA358490 16350 166 2.984252 4.95385832 uncultured Amoebozoa 590481 Root_unresolved Root_unresolved 302 1.2500000000000001e-77   NTclustered gi|221185864|gb|FJ577811.1| 590481 g16006 i0 99.401 97.9698795180723 167 0 100 1 1 166 827 993 Uncultured Amoebozoa clone Ivry07 18S ribosomal RNA gene, partial sequence blastn 16263 302 1 Eukaryota Amoebozoa             uncultured Amoebozoa
18250706 18250706 PRJNA358490_P_NODE_4235_length_685_cov_2.125387_g3993_i0 PRJNA358490 4235 685 2.125387 14.55890095 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 54.7 0.019   NTclustered gi|470469247|ref|XM_004341931.1| 1257118 g3993 i0 94.444 0.0525547445255474 36 1 5 1 388 423 1351 1385 Acanthamoeba castellanii str. Neff K+ channel tetramerization subfamily protein (ACA1_050340), partial mRNA blastn 36 54.7 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
24625287 24625287 PRJNA358490_P_NODE_3400_length_774_cov_4.601361_g3181_i0 PRJNA358490 3400 774 4.601361 35.61453414 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 726 0   NTclustered gi|470387131|ref|XM_004334213.1| 1257118 g3181 i0 89.771 0.732558139534884 567 58 73 0 136 702 1 567 Acanthamoeba castellanii str. Neff uncharacterized protein (ACA1_027050), partial mRNA blastn 567 726 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;