RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA358049" and tax_phylum = "Candidatus Absconditibacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Absconditibacteriota · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA358049 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
19524550 19524550 PRJNA358049_S_NODE_5256_length_266_cov_1.658986_g5208_i0 PRJNA358049 5256 266 1.658986 4.41290276 candidate division SR1 bacterium RAAC1_SR1_1 1394709 Bacteria Bacteria 267 7.979999999999999e-67   NTclustered gi|563351663|gb|CP006913.1| 1394709 g5208 i0 84.962 220.195488721805 266 36 99 4 4 266 125422 125686 Candidate division SR1 bacterium RAAC1_SR1_1 chromosome, complete genome blastn 58572 267 1 Bacteria Bacteria candidate phyla   Candidatus Absconditibacteriota         candidate division SR1 bacterium RAAC1_SR1_1
19524591 19524591 PRJNA358049_S_NODE_6696_length_239_cov_2.673684_g6648_i0 PRJNA358049 6696 239 2.673684 6.39010476 candidate division SR1 bacterium RAAC1_SR1_1 1394709 Bacteria Bacteria 239 1.54e-58   NTclustered gi|563351663|gb|CP006913.1| 1394709 g6648 i0 84.874 94.0334728033473 238 34 99 2 3 239 125669 125905 Candidate division SR1 bacterium RAAC1_SR1_1 chromosome, complete genome blastn 22474 239 1 Bacteria Bacteria candidate phyla   Candidatus Absconditibacteriota         candidate division SR1 bacterium RAAC1_SR1_1

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;