RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA358049" and tax_clade = "Amoebozoa"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 3 ✖

bioproject 1

  • PRJNA358049 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1073139 1073139 PRJNA358049_S_NODE_13381_length_182_cov_1.593985_g13333_i0 PRJNA358049 13381 182 1.593985 2.9010527 root 1 Root_unresolved Root_unresolved 320 3.84e-83   NTclustered gi|909719646|gb|KT185626.1| 5755 g13333 i0 98.352 31.7912087912088 182 3 100 0 1 182 3879 3698 Acanthamoeba castellanii 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 5786 320 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
13826556 13826556 PRJNA358049_S_NODE_7191_length_232_cov_1.737705_g7143_i0 PRJNA358049 7191 232 1.737705 4.0314756 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 364 2.3499999999999995e-96   NTclustered gi|441475833|emb|FN562425.4| 688089 g7143 i0 96 14.125 225 8 97 1 9 232 276 500 Amoebozoa sp. SZA36 18S rRNA gene, isolate SZA36 blastn 3277 364 1 Eukaryota Amoebozoa             Amoebozoa sp. SZA36
23350776 23350776 PRJNA358049_S_NODE_6699_length_239_cov_2.178947_g6651_i0 PRJNA358049 6699 239 2.178947 5.20768333 Physarum roseum 289967 Evosea other_Eukaryota 302 1.9300000000000002e-77   NTclustered gi|381139263|emb|HE655080.1| 289967 g6651 i0 89.3 64.5188284518828 243 22 100 3 1 239 1468 1226 Physarum roseum partial 28S rRNA gene, strain C1 blastn 15420 302 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Physaraceae Physarum Physarum roseum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;