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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA358009" and tax_superkingdom = "Archaea"

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tax_superkingdom 1

  • Archaea · 6 ✖

tax_kingdom 1

bioproject 1

  • PRJNA358009 · 6 ✖

analysis 1

  • blastn · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2948954 2948954 PRJNA358009_P_NODE_9183_length_187_cov_6.739130_g9114_i0 PRJNA358009 9183 187 6.73913 12.6021731 Thermoplasmata archaeon 1906666 Archaea Archaea 91.6 3.39e-14   NTclustered gi|2108430933|gb|CP070629.1| 1906666 g9114 i0 88.158 21.6256684491979 76 9 41 0 11 86 286871 286946 MAG: Thermoplasmata archaeon isolate bin983 chromosome blastn 4044 91.6 1 Archaea   Methanobacteriati Thermoplasmatota Thermoplasmata       Thermoplasmata archaeon
15700786 15700786 PRJNA358009_P_NODE_1113_length_364_cov_2.244444_g1052_i0 PRJNA358009 1113 364 2.244444 8.16977616 uncultured Methanomethylovorans sp. 183759 Archaea Archaea 243 1.91e-59   NTclustered gi|2814788356|emb|OY782867.2| 183759 g1052 i0 99.254 81.7967032967033 134 1 62 0 4 137 340124 340257 MAG: uncultured Methanomethylovorans sp. isolate 1bea500b-d65c-4789-84bd-533d56c43360 genome assembly, chromosome: 1 blastn 29774 243 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanomethylovorans uncultured Methanomethylovorans sp.
16975542 16975542 PRJNA358009_P_NODE_10714_length_178_cov_2.844961_g10645_i0 PRJNA358009 10714 178 2.844961 5.06403058 uncultured Methanomethylovorans sp. 183759 Archaea Archaea 313 6.259999999999999e-81   NTclustered gi|2814788356|emb|OY782867.2| 183759 g10645 i0 99.419 227.921348314607 172 1 97 0 7 178 339821 339650 MAG: uncultured Methanomethylovorans sp. isolate 1bea500b-d65c-4789-84bd-533d56c43360 genome assembly, chromosome: 1 blastn 40570 313 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanomethylovorans uncultured Methanomethylovorans sp.
19524201 19524201 PRJNA358009_P_NODE_9696_length_184_cov_4.755556_g9627_i0 PRJNA358009 9696 184 4.755556 8.75022304 uncultured Methanomethylovorans sp. 183759 Archaea Archaea 305 1.09e-78   NTclustered gi|2814788356|emb|OY782867.2| 183759 g9627 i0 97.74 71.9891304347826 177 4 96 0 8 184 340789 340613 MAG: uncultured Methanomethylovorans sp. isolate 1bea500b-d65c-4789-84bd-533d56c43360 genome assembly, chromosome: 1 blastn 13246 305 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanomethylovorans uncultured Methanomethylovorans sp.
20198997 20198997 PRJNA358009_P_NODE_1156_length_359_cov_3.132258_g1095_i0 PRJNA358009 1156 359 3.132258 11.24480622 root 1 Root_unresolved Root_unresolved 385 2.95e-102   NTclustered gi|103488695|gb|DQ516748.1| 2190 g1095 i0 100 2.55710306406685 208 0 58 0 1 208 483 276 Methanocaldococcus jannaschii spike-in control MJ-500-31 genomic sequence blastn 918 385 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanococci Methanococcales Methanocaldococcaceae Methanocaldococcus Methanocaldococcus jannaschii
25299220 25299220 PRJNA358009_P_NODE_4220_length_327_cov_2.215827_g4157_i0 PRJNA358009 4220 327 2.215827 7.24575429 Halobacterium 2239 Archaea Archaea 185 2.91e-42   NTclustered gi|255976512|emb|FN435862.1| 115547 g4157 i0 100 47.9296636085627 100 0 61 0 1 100 292 391 Uncultured archaeon partial 16S rRNA gene, clone 15 blastn 15673 185 1 Archaea               uncultured archaeon

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;