RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA358009" and tax_kingdom = "Pararnavirae"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Pararnavirae · 5 ✖

bioproject 1

  • PRJNA358009 · 5 ✖

analysis 1

  • blastn · 5 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4900846 4900846 PRJNA358009_P_NODE_1144_length_360_cov_49.482315_g1083_i0 PRJNA358009 1144 360 49.482315 178.136334 root 1 Root_unresolved Root_unresolved 525 1.6699999999999996e-144   NTclustered gi|331934|gb|J02255.1|MLMCG 11786 g1083 i0 98.976 81.3888888888889 293 3 81 0 1 293 2888 2596 Moloney murine leukemia virus, complete genome blastn 29300 525 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
11276309 11276309 PRJNA358009_P_NODE_7189_length_268_cov_36.378995_g7122_i0 PRJNA358009 7189 268 36.378995 97.4957066 Gammaretrovirus 153135 Viruses Viruses 468 2.06e-127   NTclustered gi|331934|gb|J02255.1|MLMCG 11786 g7122 i0 99.228 96.6007462686567 259 2 97 0 4 262 4401 4143 Moloney murine leukemia virus, complete genome blastn 25889 468 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
13826449 13826449 PRJNA358009_P_NODE_71_length_905_cov_45.957944_g45_i0 PRJNA358009 71 905 45.957944 415.9193932 Gammaretrovirus 153135 Viruses Viruses 1611 0   NTclustered gi|331934|gb|J02255.1|MLMCG 11786 g45 i0 99.548 97.6640883977901 884 4 98 0 22 905 4145 3262 Moloney murine leukemia virus, complete genome blastn 88386 1611 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
17650699 17650699 PRJNA358009_P_NODE_8854_length_189_cov_7.064286_g8785_i0 PRJNA358009 8854 189 7.064286 13.35150054 root 1 Root_unresolved Root_unresolved 307 3.1300000000000003e-79   NTclustered gi|60236|emb|X63045.1| 11676 g8785 i0 99.412 99.8412698412698 170 0 89 1 1 169 445 614 HIV-1 nef gene (PCRnef6) blastn 18870 307 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
24024818 24024818 PRJNA358009_P_NODE_8179_length_205_cov_8.474359_g8110_i0 PRJNA358009 8179 205 8.474359 17.37243595 Gammaretrovirus 153135 Viruses Viruses 187 4.6999999999999985e-43   NTclustered gi|331934|gb|J02255.1|MLMCG 11786 g8110 i0 98.131 2.58536585365854 107 2 52 0 92 198 4600 4494 Moloney murine leukemia virus, complete genome blastn 530 187 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;