RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA358009" and tax_clade = "Cyanobacteriota/Melainabacteria group"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • Cyanobacteriota/Melainabacteria group · 5 ✖

bioproject 1

  • PRJNA358009 · 5 ✖

analysis 1

  • blastn · 5 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4900931 4900931 PRJNA358009_P_NODE_2844_length_327_cov_3.183453_g2781_i0 PRJNA358009 2844 327 3.183453 10.40989131 Cyanophyceae 3028117 Bacteria Bacteria 185 2.91e-42   NTclustered gi|1345606782|gb|MG968516.1| 2081952 g2781 i0 100 54.17125382263 100 0 61 0 1 100 40 139 Phormidium sp. UTEX B EE30 23S ribosomal RNA gene, partial sequence blastn 17714 185 1 Bacteria Cyanobacteriota/Melainabacteria group Bacillati Cyanobacteriota Cyanophyceae Oscillatoriales Oscillatoriaceae Phormidium Phormidium sp. UTEX B EE30
20799785 20799785 PRJNA358009_P_NODE_2817_length_327_cov_3.208633_g2754_i0 PRJNA358009 2817 327 3.208633 10.49222991 Leptolyngbya sp. 7M 2812896 Bacteria Bacteria 124 6.419999999999999e-24   NTclustered gi|2028908486|gb|CP070897.1| 2812896 g2754 i0 90.426 0.287461773700306 94 9 29 0 228 321 1099881 1099788 Leptolyngbya sp. 7M chromosome blastn 94 124 1 Bacteria Cyanobacteriota/Melainabacteria group Bacillati Cyanobacteriota Cyanophyceae Leptolyngbyales Leptolyngbyaceae Leptolyngbya Leptolyngbya sp. 7M
23350318 23350318 PRJNA358009_P_NODE_6379_length_327_cov_1.428058_g6316_i0 PRJNA358009 6379 327 1.428058 4.66974966 Allocoleopsis franciscana 2886352 Bacteria Bacteria 147 1.37e-30   NTclustered gi|428249989|gb|CP003630.1| 1173027 g6316 i0 93.814 0.296636085626911 97 6 30 0 231 327 1198032 1197936 Allocoleopsis franciscana PCC 7113, complete genome blastn 97 147 1 Bacteria Cyanobacteriota/Melainabacteria group Bacillati Cyanobacteriota Cyanophyceae Coleofasciculales Coleofasciculaceae Allocoleopsis Allocoleopsis franciscana
24024690 24024690 PRJNA358009_P_NODE_15039_length_163_cov_2.350877_g14970_i0 PRJNA358009 15039 163 2.350877 3.83192951 Bacillati 1783272 Bacteria Bacteria 97.1 6.19e-16   NTclustered gi|1026260080|gb|KU219737.1| 1844238 g14970 i0 98.182 34.079754601227 55 1 34 0 8 62 1407 1353 Phormidesmis arctica MUM 11-7 16S ribosomal RNA gene and 16S-23S ribosomal RNA intergenic spacer, partial sequence blastn 5555 97.1 1 Bacteria Cyanobacteriota/Melainabacteria group Bacillati Cyanobacteriota Cyanophyceae Leptolyngbyales Leptolyngbyaceae Phormidesmis Phormidesmis arctica
25299234 25299234 PRJNA358009_P_NODE_5360_length_327_cov_1.780576_g5297_i0 PRJNA358009 5360 327 1.780576 5.82248352 Synechococcus 1129 Bacteria Bacteria 174 6.29e-39   NTclustered gi|2672429148|gb|CP030139.2| 2219813 g5297 i0 98 46.0672782874618 100 2 31 0 228 327 1777721 1777622 Synechococcus elongatus PCC 11801 chromosome, complete genome blastn 15064 174 1 Bacteria Cyanobacteriota/Melainabacteria group Bacillati Cyanobacteriota Cyanophyceae Synechococcales Synechococcaceae Synechococcus Synechococcus elongatus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;