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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA358009" and tax_clade = "Amoebozoa"

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tax_phylum 3

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 6 ✖

bioproject 1

  • PRJNA358009 · 6 ✖

analysis 1

  • blastn · 6 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
398368 398368 PRJNA358009_P_NODE_5861_length_327_cov_1.615108_g5798_i0 PRJNA358009 5861 327 1.615108 5.28140316 Amoebozoa sp. 1892891 Root_unresolved Root_unresolved 128 4.97e-25   NTclustered gi|2651357789|gb|PP174304.1| 1892891 g5798 i0 92.222 1.3914373088685 90 7 28 0 237 326 4204 4115 Amoebozoa sp. isolate 114_WLI small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 455 128 1 Eukaryota Amoebozoa             Amoebozoa sp.
6775774 6775774 PRJNA358009_P_NODE_12206_length_170_cov_4.355372_g12137_i0 PRJNA358009 12206 170 4.355372 7.4041324 uncultured Soliformovum 2510342 Evosea other_Eukaryota 250 4.7e-62   NTclustered gi|1564356923|gb|MK443523.1| 2510342 g12137 i0 94.479 2.40588235294118 163 8 95 1 8 169 238 400 Uncultured Soliformovum clone OTUA345 small subunit ribosomal RNA gene, partial sequence; mitochondrial blastn 409 250 1 Eukaryota Amoebozoa   Evosea Variosea Protosteliida Protosteliaceae   uncultured Soliformovum
6775882 6775882 PRJNA358009_P_NODE_16806_length_159_cov_4.027273_g16737_i0 PRJNA358009 16806 159 4.027273 6.40336407 Diderma niveum 372584 Evosea other_Eukaryota 176 7.49e-40   NTclustered gi|116010584|emb|AM407429.1| 372584 g16737 i0 87.342 33.5094339622642 158 14 96 4 8 159 3518 3675 Diderma niveum partial 26S rRNA gene, isolate K10 blastn 5328 176 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Didymiaceae Diderma Diderma niveum
9326303 9326303 PRJNA358009_P_NODE_1488_length_343_cov_3.153061_g1427_i0 PRJNA358009 1488 343 3.153061 10.81499923 uncultured Rhizamoeba 1260765 Tubulinea other_Eukaryota 111 5.28e-20   NTclustered gi|511487963|gb|JX898537.1| 1260765 g1427 i0 87.629 20.4518950437318 97 10 28 2 2 97 270 175 Uncultured Rhizamoeba clone HCA_D03-34 28S ribosomal RNA gene, partial sequence blastn 7015 111 1 Eukaryota Amoebozoa   Tubulinea Elardia Leptomyxida Flabellulidae   uncultured Rhizamoeba
22074833 22074833 PRJNA358009_P_NODE_1958_length_331_cov_1.953901_g1895_i0 PRJNA358009 1958 331 1.953901 6.46741231 Ceratiomyxella tahitiensis 661162 Evosea other_Eukaryota 191 6.33e-44   NTclustered gi|254679474|gb|FJ544419.1| 661162 g1895 i0 94.444 39.9969788519637 126 4 67 3 204 328 795 672 Ceratiomyxella tahitiensis isolate HI04-93-l-1 18S ribosomal RNA gene, partial sequence blastn 13239 191 1 Eukaryota Amoebozoa   Evosea Variosea Fractovitellida Schizoplasmodiidae Ceratiomyxella Ceratiomyxella tahitiensis
24624329 24624329 PRJNA358009_P_NODE_10240_length_181_cov_2.446970_g10171_i0 PRJNA358009 10240 181 2.44697 4.4290157 Acanthamoeba healyi 65661 Discosea other_Eukaryota 75 3.28e-9   NTclustered gi|28194604|gb|AF479548.1| 65661 g10171 i0 79.464 0.61878453038674 112 18 61 5 16 125 340 232 Acanthamoeba healyi strain CDC V013 16S small subunit ribosomal RNA gene, partial sequence; mitochondrial gene for mitochondrial product blastn 112 75 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba healyi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;