RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA356682" and tax_phylum = "Mollusca"

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tax_superkingdom 1

tax_phylum 1

  • Mollusca · 5 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA356682 · 5 ✖

analysis 1

  • blastn · 5 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1072113 1072113 PRJNA356682_P_NODE_15321_length_362_cov_2.152249_g14631_i0 PRJNA356682 15321 362 2.152249 7.79114138 Ostreidae 6563 Mollusca Mollusca 664 0   NTclustered gi|2087356261|dbj|LC648604.1| 29159 g14631 i0 99.724 100.091160220994 362 1 100 0 1 362 441 80 Crassostrea gigas IDEA_Shell201 gene for 28S rRNA, partial sequence blastn 36233 664 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Ostreida Ostreidae Magallana Magallana gigas
2948427 2948427 PRJNA356682_P_NODE_39383_length_247_cov_0.885057_g38692_i0 PRJNA356682 39383 247 0.885057 2.18609079 Bradybaena similaris 145626 Mollusca Mollusca 54.7 0.006   NTclustered gi|2912989933|dbj|AP039594.1| 145626 g38692 i0 96.875 0.37246963562753 32 1 13 0 147 178 42336707 42336738 Bradybaena similaris mixture of YIPCMo001421 and YIPCMo001540 DNA, chromosome 13, sequence blastn 92 54.7 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Stylommatophora Camaenidae Bradybaena Bradybaena similaris
21474275 21474275 PRJNA356682_P_NODE_9077_length_464_cov_1.966752_g8388_i0 PRJNA356682 9077 464 1.966752 9.12572928 Metazoa 33208 Mollusca Mollusca 243 2.49e-59   NTclustered gi|2669130458|ref|XM_062742568.1| 36930 g8388 i0 81.169 63.5474137931034 308 52 65 5 62 364 483 177 PREDICTED: Saccostrea cucullata histone H2B-like (LOC134259977), mRNA blastn 29486 244 0.995901639344262 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Ostreida Ostreidae Saccostrea Saccostrea cuccullata
22749359 22749359 PRJNA356682_P_NODE_45918_length_233_cov_3.268750_g45227_i0 PRJNA356682 45918 233 3.26875 7.6161875 Magallana 147004 Mollusca Mollusca 422 1.38e-113   NTclustered gi|28375710|dbj|AB102757.1| 29159 g45227 i0 99.142 101.871244635193 233 2 100 0 1 233 2523 2291 Crassostrea gigas genes for ITS2, 28S rRNA, partial sequence, country: Japan: Okinawa (Haneji inland sea) blastn 23736 425 0.992941176470588 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Ostreida Ostreidae Magallana Magallana gigas
23349338 23349338 PRJNA356682_P_NODE_21699_length_311_cov_2.352941_g21008_i0 PRJNA356682 21699 311 2.352941 7.31764651 Pecten maximus 6579 Mollusca Mollusca 143 1.6799999999999999e-29   NTclustered gi|1835500577|ref|XM_033901340.1| 6579 g21008 i0 89.381 21.064308681672 113 12 36 0 2 114 1434 1546 PREDICTED: Pecten maximus tubulin alpha-1A chain (LOC117339638), mRNA blastn 6551 143 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Pectinida Pectinidae Pecten Pecten maximus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;