RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

20 rows where analysis = "blastn", bioproject = "PRJNA356682" and tax_phylum = "Heterolobosea"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Heterolobosea · 20 ✖

tax_clade 1

bioproject 1

  • PRJNA356682 · 20 ✖

analysis 1

  • blastn · 20 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
397272 397272 PRJNA356682_P_NODE_13241_length_387_cov_2.420382_g12551_i0 PRJNA356682 13241 387 2.420382 9.36687834 Vahlkampfia sp. 1874882 Heterolobosea other_Eukaryota 113 1.67e-20   NTclustered gi|2651357786|gb|PP174301.1| 1874882 g12551 i0 94.521 0.439276485788114 73 4 19 0 315 387 3852 3924 Vahlkampfia sp. isolate 24M small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 170 113 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Vahlkampfia Vahlkampfia sp.
1072271 1072271 PRJNA356682_P_NODE_26341_length_287_cov_1.200935_g25650_i0 PRJNA356682 26341 287 1.200935 3.44668345 Allovahlkampfia 1217108 Heterolobosea other_Eukaryota 520 6.049999999999999e-143   NTclustered gi|89148135|gb|DQ388520.1| 373144 g25650 i0 99.303 57.0627177700348 287 2 100 0 1 287 534 248 Heterolobosea sp. OSA 16S small subunit ribosomal RNA gene, partial sequence blastn 16377 525 0.990476190476191 Eukaryota Discoba   Heterolobosea         Heterolobosea sp. OSA
2948068 2948068 PRJNA356682_P_NODE_23623_length_300_cov_2.378855_g22932_i0 PRJNA356682 23623 300 2.378855 7.136565 Naegleria pringsheimi 234921 Heterolobosea other_Eukaryota 555 1.7399999999999995e-153   NTclustered gi|2515557648|gb|OR045415.1| 234921 g22932 i0 100 25.3666666666667 300 0 100 0 1 300 5186 5485 Naegleria pringsheimi strain Singh(s) rDNA-containing extrachromosomal element genomic sequence; 18S small subunit ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S large subunit ribosomal RNA gene, complete sequence; and non-ribosomal sequence blastn 7610 555 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria pringsheimi
5500789 5500789 PRJNA356682_P_NODE_10865_length_424_cov_3.595442_g10175_i0 PRJNA356682 10865 424 3.595442 15.24467408 Vahlkampfia sp. 1874882 Heterolobosea other_Eukaryota 296 1.71e-75   NTclustered gi|2651357786|gb|PP174301.1| 1874882 g10175 i0 86.716 0.639150943396226 271 31 63 4 58 326 3323 3590 Vahlkampfia sp. isolate 24M small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 271 296 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Vahlkampfia Vahlkampfia sp.
5501701 5501701 PRJNA356682_P_NODE_9845_length_445_cov_2.698925_g9155_i0 PRJNA356682 9845 445 2.698925 12.01021625 Tetramitus jugosus 166959 Heterolobosea other_Eukaryota 412 1.7099999999999995e-110   NTclustered gi|2233316042|emb|OW569396.1| 166959 g9155 i0 84 45.7977528089888 450 50 97 12 11 441 20601 21047 Tetramitus jugosus genome assembly, organelle: mitochondrion blastn 20380 412 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Tetramitus Tetramitus jugosus
8050781 8050781 PRJNA356682_P_NODE_2687_length_903_cov_1.890361_g2098_i0 PRJNA356682 2687 903 1.890361 17.06995983 Vahlkampfia sp. 1874882 Heterolobosea other_Eukaryota 193 5.15e-44   NTclustered gi|2651357786|gb|PP174301.1| 1874882 g2098 i0 93.75 5.63012181616833 128 8 35 0 212 339 3983 3856 Vahlkampfia sp. isolate 24M small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 5084 193 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Vahlkampfia Vahlkampfia sp.
8050842 8050842 PRJNA356682_P_NODE_29227_length_274_cov_2.467662_g28536_i0 PRJNA356682 29227 274 2.467662 6.76139388 Tetramitus jugosus 166959 Heterolobosea other_Eukaryota 294 3.79e-75   NTclustered gi|2233316042|emb|OW569396.1| 166959 g28536 i0 86.331 96.985401459854 278 29 100 7 1 274 21352 21080 Tetramitus jugosus genome assembly, organelle: mitochondrion blastn 26574 294 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Tetramitus Tetramitus jugosus
8051080 8051080 PRJNA356682_P_NODE_38967_length_247_cov_2.626437_g38276_i0 PRJNA356682 38967 247 2.626437 6.4872993900000004 Vahlkampfia sp. E-8 2892640 Heterolobosea other_Eukaryota 457 4.05e-124   NTclustered gi|2152698721|dbj|LC655700.1| 2892640 g38276 i0 100 99.1255060728745 247 0 100 0 1 247 1129 883 Vahlkampfia sp. E-8 gene for 18S rRNA, partial sequence blastn 24484 457 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Vahlkampfia Vahlkampfia sp. E-8
11275624 11275624 PRJNA356682_P_NODE_34069_length_257_cov_1.211957_g33378_i0 PRJNA356682 34069 257 1.211957 3.11472949 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 137 6.27e-28   NTclustered gi|113926795|emb|AM114803.1| 352378 g33378 i0 83.784 1.72762645914397 148 20 57 3 111 256 776 921 Uncultured heterolobosean partial 18S rRNA gene, clone WIM43 blastn 444 137 1 Eukaryota Discoba   Heterolobosea         uncultured heterolobosean
15699956 15699956 PRJNA356682_P_NODE_16373_length_352_cov_2.885305_g15682_i0 PRJNA356682 16373 352 2.885305 10.1562736 Vahlkampfia lobospinosa 5771 Heterolobosea other_Eukaryota 619 7.269999999999999e-173   NTclustered gi|162549|gb|M98052.1|VALRG16S 5771 g15682 i0 98.305 83.9375 354 4 100 2 1 352 1981 1628 Vahlkampfia lobospinosa 16S ribosoma RNA-like gene blastn 29546 619 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Vahlkampfia Vahlkampfia lobospinosa
16974659 16974659 PRJNA356682_P_NODE_15294_length_362_cov_9.342561_g14604_i0 PRJNA356682 15294 362 9.342561 33.82007082 Dactylomonas crassa 2029719 Heterolobosea other_Eukaryota 226 1.91e-54   NTclustered gi|1237896676|gb|KX670815.1| 2029719 g14604 i0 80.583 36.3756906077348 309 47 83 13 1 302 581 279 Dactylomonas crassa strain RABBIT small subunit ribosomal RNA gene, partial sequence blastn 13168 226 1 Eukaryota Discoba   Heterolobosea     Selenaionidae Dactylomonas Dactylomonas crassa
16974824 16974824 PRJNA356682_P_NODE_23054_length_303_cov_3.147826_g22363_i0 PRJNA356682 23054 303 3.147826 9.53791278 Vahlkampfia sp. 1874882 Heterolobosea other_Eukaryota 220 7.31e-53   NTclustered gi|2651357786|gb|PP174301.1| 1874882 g22363 i0 92.763 12.2871287128713 152 11 50 0 152 303 3851 4002 Vahlkampfia sp. isolate 24M small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 3723 220 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Vahlkampfia Vahlkampfia sp.
18924035 18924035 PRJNA356682_P_NODE_7455_length_513_cov_4.131818_g6767_i0 PRJNA356682 7455 513 4.131818 21.19622634 Vahlkampfiidae 5765 Heterolobosea other_Eukaryota 761 0   NTclustered gi|162549|gb|M98052.1|VALRG16S 5771 g6767 i0 97.748 49.9707602339181 444 7 87 3 1 444 162 602 Vahlkampfia lobospinosa 16S ribosoma RNA-like gene blastn 25635 765 0.994771241830065 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Vahlkampfia Vahlkampfia lobospinosa
19523496 19523496 PRJNA356682_P_NODE_33716_length_258_cov_1.383784_g33025_i0 PRJNA356682 33716 258 1.383784 3.57016272 Heterolobosea sp. 1892890 Heterolobosea other_Eukaryota 60.2 1.4e-4   NTclustered gi|2651357799|gb|PP174312.1| 1892890 g33025 i0 100 0.341085271317829 32 0 12 0 107 138 3347 3316 Heterolobosea sp. isolate S28D10 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 88 60.2 1 Eukaryota Discoba   Heterolobosea         Heterolobosea sp.
20799013 20799013 PRJNA356682_P_NODE_27897_length_280_cov_1.487923_g27206_i0 PRJNA356682 27897 280 1.487923 4.1661844 Allovahlkampfia sp. 1874883 Heterolobosea other_Eukaryota 473 4.649999999999999e-129   NTclustered gi|2651357779|gb|PP174295.1| 1874883 g27206 i0 97.153 3.00357142857143 281 7 100 1 1 280 3704 3984 Allovahlkampfia sp. isolate P10 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 841 473 1 Eukaryota Discoba   Heterolobosea     Acrasidae Allovahlkampfia Allovahlkampfia sp.
20799466 20799466 PRJNA356682_P_NODE_46397_length_229_cov_3.980769_g45706_i0 PRJNA356682 46397 229 3.980769 9.11596101 Heterolobosea sp. 1892890 Heterolobosea other_Eukaryota 211 3.19e-50   NTclustered gi|2169663310|gb|OL989986.1| 1892890 g45706 i0 84.279 22.9519650655022 229 23 100 12 1 229 87 302 Heterolobosea sp. isolate S18D10 small subunit ribosomal RNA gene, partial sequence blastn 5256 211 1 Eukaryota Discoba   Heterolobosea         Heterolobosea sp.
22074066 22074066 PRJNA356682_P_NODE_26038_length_288_cov_1.586047_g25347_i0 PRJNA356682 26038 288 1.586047 4.56781536 Heterolobosea sp. 1892890 Heterolobosea other_Eukaryota 270 6.76e-68   NTclustered gi|2651357799|gb|PP174312.1| 1892890 g25347 i0 88.034 1.31944444444444 234 20 80 7 59 288 2197 1968 Heterolobosea sp. isolate S28D10 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 380 270 1 Eukaryota Discoba   Heterolobosea         Heterolobosea sp.
23349233 23349233 PRJNA356682_P_NODE_17179_length_344_cov_4.321033_g16488_i0 PRJNA356682 17179 344 4.321033 14.86435352 Vahlkampfia sp. 1874882 Heterolobosea other_Eukaryota 512 1.24e-140   NTclustered gi|2651357786|gb|PP174301.1| 1874882 g16488 i0 93.642 101.587209302326 346 17 100 4 1 344 2837 3179 Vahlkampfia sp. isolate 24M small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 34946 512 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Vahlkampfia Vahlkampfia sp.
23349923 23349923 PRJNA356682_P_NODE_47159_length_216_cov_5.727273_g46468_i0 PRJNA356682 47159 216 5.727273 12.37090968 Vahlkampfia sp. 1874882 Heterolobosea other_Eukaryota 244 2.93e-60   NTclustered gi|2651357786|gb|PP174301.1| 1874882 g46468 i0 87.215 100.583333333333 219 22 100 4 1 216 2954 3169 Vahlkampfia sp. isolate 24M small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 21726 244 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Vahlkampfia Vahlkampfia sp.
23350039 23350039 PRJNA356682_P_NODE_9939_length_443_cov_7.991892_g9249_i0 PRJNA356682 9939 443 7.991892 35.40408156 Vahlkampfia lobospinosa 5771 Heterolobosea other_Eukaryota 784 0   NTclustered gi|162549|gb|M98052.1|VALRG16S 5771 g9249 i0 98.646 84.920993227991 443 4 100 1 1 443 852 1292 Vahlkampfia lobospinosa 16S ribosoma RNA-like gene blastn 37620 784 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Vahlkampfia Vahlkampfia lobospinosa

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;