RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA356682" and tax_phylum = "Chytridiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Chytridiomycota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA356682 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2947977 2947977 PRJNA356682_P_NODE_19143_length_329_cov_1.121094_g18452_i0 PRJNA356682 19143 329 1.121094 3.68839926 Lobulomycetales sp. 2058121 Fungi Fungi 231 3.71e-56   NTclustered gi|2468791020|gb|OQ702922.1| 2058121 g18452 i0 83.146 56.9787234042553 267 32 80 11 18 280 3896 4153 Lobulomycetales sp. isolate PSC248 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 18746 231 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Lobulomycetales     Lobulomycetales sp.
18923478 18923478 PRJNA356682_P_NODE_10015_length_442_cov_2.409214_g9325_i0 PRJNA356682 10015 442 2.409214 10.64872588 Nowakowskiella 109880 Fungi Fungi 200 1.44e-46   NTclustered gi|1866582484|gb|MT730659.1| 109881 g9325 i0 80.37 50.4954751131222 270 47 60 6 1 265 3878 4146 Nowakowskiella elegans isolate JEL0046 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 22319 200 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Cladochytriales Nowakowskiellaceae Nowakowskiella Nowakowskiella elegans
19523186 19523186 PRJNA356682_P_NODE_19916_length_323_cov_1.600000_g19225_i0 PRJNA356682 19916 323 1.6 5.168 Cladochytrium sp. 2491358 Fungi Fungi 187 7.969999999999999e-43   NTclustered gi|1866582705|gb|MT730880.1| 2491358 g19225 i0 84.264 58.7894736842105 197 25 60 5 47 240 5360 5553 Cladochytrium sp. isolate JEL0900 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 18989 187 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Cladochytriales Cladochytriaceae Cladochytrium Cladochytrium sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;