RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA356682" and tax_phylum = "Cercozoa"

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tax_superkingdom 1

tax_phylum 1

  • Cercozoa · 6 ✖

tax_clade 1

bioproject 1

  • PRJNA356682 · 6 ✖

analysis 1

  • blastn · 6 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2948066 2948066 PRJNA356682_P_NODE_23563_length_300_cov_7.568282_g22872_i0 PRJNA356682 23563 300 7.568282 22.704846 Esquamula lacrimiformis 1176540 SAR_Eukaryotes SAR_Eukaryotes 200 9.42e-47   NTclustered gi|409971369|dbj|AB714271.1| 1176540 g22872 i0 93.382 48.73 136 7 45 2 1 134 3711 3846 Esquamula lacrimiformis gene for 28S ribosomal RNA, partial sequence blastn 14619 200 1 Eukaryota Sar   Cercozoa Imbricatea Thaumatomonadida   Esquamula Esquamula lacrimiformis
4225054 4225054 PRJNA356682_P_NODE_4084_length_708_cov_5.866142_g3430_i0 PRJNA356682 4084 708 5.866142 41.53228536 Protaspis grandis 361427 SAR_Eukaryotes SAR_Eukaryotes 800 0   NTclustered gi|290760486|gb|GQ144689.1| 361427 g3430 i0 94.902 74.7528248587571 510 26 72 0 199 708 2129 1620 Protaspis grandis large subunit ribosomal RNA gene, partial sequence blastn 52925 800 1 Eukaryota Sar   Cercozoa Imbricatea Thaumatomonadida Thaumatomastigidae Protaspis Protaspis grandis
8050753 8050753 PRJNA356682_P_NODE_25687_length_290_cov_1.184332_g24996_i0 PRJNA356682 25687 290 1.184332 3.4345628 Esquamula lacrimiformis 1176540 SAR_Eukaryotes SAR_Eukaryotes 265 3.1699999999999996e-66   NTclustered gi|409971369|dbj|AB714271.1| 1176540 g24996 i0 83.673 51.4862068965517 294 34 100 12 1 290 3711 3994 Esquamula lacrimiformis gene for 28S ribosomal RNA, partial sequence blastn 14931 265 1 Eukaryota Sar   Cercozoa Imbricatea Thaumatomonadida   Esquamula Esquamula lacrimiformis
13151206 13151206 PRJNA356682_P_NODE_26831_length_285_cov_0.783019_g26140_i0 PRJNA356682 26831 285 0.783019 2.23160415 Mesofila limnetica 1979842 SAR_Eukaryotes SAR_Eukaryotes 294 3.96e-75   NTclustered gi|88792585|gb|DQ386166.1| 1979842 g26140 i0 86.282 94.6912280701754 277 31 96 6 1 273 1868 1595 Dimorpha-like sp. ATCC 50522 28S ribosomal RNA gene, partial sequence blastn 26987 294 1 Eukaryota Sar   Cercozoa     Mesofilidae Mesofila Mesofila limnetica
14426716 14426716 PRJNA356682_P_NODE_44972_length_241_cov_0.916667_g44281_i0 PRJNA356682 44972 241 0.916667 2.20916747 Cercomonas sp. 1979794 SAR_Eukaryotes SAR_Eukaryotes 113 9.81e-21   NTclustered gi|2651357794|gb|PP174308.1| 1979794 g44281 i0 93.421 31.8340248962656 76 5 49 0 1 76 4116 4191 Cercomonas sp. isolate JGP5 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 7672 113 1 Eukaryota Sar   Cercozoa   Cercomonadida Cercomonadidae Cercomonas Cercomonas sp.
20799163 20799163 PRJNA356682_P_NODE_33897_length_257_cov_1.989130_g33206_i0 PRJNA356682 33897 257 1.98913 5.1120641000000004 uncultured Cercozoa 175275 SAR_Eukaryotes SAR_Eukaryotes 78.7 3.86e-10   NTclustered gi|1270185586|gb|MG266087.1| 175275 g33206 i0 86.301 2.79377431906615 73 8 28 2 22 92 641 569 Uncultured Cercozoa clone MossITSLSU910 large subunit ribosomal RNA gene, partial sequence blastn 718 78.7 1 Eukaryota Sar   Cercozoa         uncultured Cercozoa

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;