RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA352850" and tax_phylum = "Mollusca"

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tax_superkingdom 1

tax_phylum 1

  • Mollusca · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA352850 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4224007 4224007 PRJNA352850_P_NODE_78244_length_253_cov_1.000000_g75411_i0 PRJNA352850 78244 253 1 2.53 Mizuhopecten yessoensis 6573 Mollusca Mollusca 52.8 0.023   NTclustered gi|1207981311|ref|XM_021484536.1| 6573 g75411 i0 96.875 0.126482213438735 32 0 13 1 161 192 943 973 PREDICTED: Mizuhopecten yessoensis homeotic protein female sterile-like (LOC110441415), mRNA blastn 32 52.8 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Pectinida Pectinidae Mizuhopecten Mizuhopecten yessoensis
7449622 7449622 PRJNA352850_P_NODE_73986_length_261_cov_0.929245_g71153_i0 PRJNA352850 73986 261 0.929245 2.42532945 Metazoa 33208 Mollusca Mollusca 462 9.28e-126   NTclustered gi|1928112766|gb|MT947789.1| 6523 g71153 i0 98.842 97.7241379310345 259 3 99 0 3 261 1 259 Lymnaea stagnalis isolate Lsta_466444 hypothetical protein mRNA, complete cds blastn 25506 466 0.991416309012876 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda   Lymnaeidae Lymnaea Lymnaea stagnalis
13825235 13825235 PRJNA352850_P_NODE_79711_length_250_cov_1.293532_g76878_i0 PRJNA352850 79711 250 1.293532 3.23383 Metazoa 33208 Mollusca Mollusca 462 8.83e-126   NTclustered gi|1928112764|gb|MT947788.1| 6523 g76878 i0 100 99.976 250 0 100 0 1 250 1083 1332 Lymnaea stagnalis isolate Lsta_434075 hypothetical protein mRNA, complete cds blastn 24994 462 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda   Lymnaeidae Lymnaea Lymnaea stagnalis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;