RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA352850" and tax_phylum = "Discosea"

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tax_superkingdom 1

tax_phylum 1

  • Discosea · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA352850 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
395185 395185 PRJNA352850_P_NODE_25441_length_547_cov_10.277108_g22622_i0 PRJNA352850 25441 547 10.277108 56.21578076 Ripella sp. 805 1217113 Discosea other_Eukaryota 857 0   NTclustered gi|399764202|gb|JQ271713.1| 1217113 g22622 i0 95.404 99.5393053016453 544 16 99 9 8 547 1 539 Ripella sp. 805 18S ribosomal RNA gene, partial sequence blastn 54448 857 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Ripella Ripella sp. 805
1669897 1669897 PRJNA352850_P_NODE_28182_length_510_cov_6.646421_g25356_i0 PRJNA352850 28182 510 6.646421 33.8967471 Ripella decalvata 2047822 Discosea other_Eukaryota 610 6.569999999999997e-170   NTclustered gi|1269228423|gb|MF683548.1| 2047822 g25356 i0 94.71 77.6196078431373 397 13 77 7 1 392 1165 1558 Ripella decalvata clone 26.2.2 18S ribosomal RNA gene, partial sequence blastn 39586 610 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Ripella Ripella decalvata
5498852 5498852 PRJNA352850_P_NODE_28325_length_508_cov_6.653595_g25499_i0 PRJNA352850 28325 508 6.653595 33.8002626 Ripella sp. 805 1217113 Discosea other_Eukaryota 850 0   NTclustered gi|399764202|gb|JQ271713.1| 1217113 g25499 i0 96.857 102.092519685039 509 14 100 2 1 508 1044 537 Ripella sp. 805 18S ribosomal RNA gene, partial sequence blastn 51863 850 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Ripella Ripella sp. 805
11873469 11873469 PRJNA352850_P_NODE_16950_length_732_cov_3.768668_g14276_i0 PRJNA352850 16950 732 3.768668 27.58664976 Cochliopodium spiniferum 313558 Discosea other_Eukaryota 739 0   NTclustered gi|330902897|gb|JF298273.1| 313558 g14276 i0 84.973 99.9945355191257 732 106 99 4 3 732 52 781 Cochliopodium spiniferum clone 5102 actin gene, partial cds blastn 73196 739 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium spiniferum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;