RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

8 rows where analysis = "blastn", bioproject = "PRJNA352850" and tax_phylum = "Candidatus Altimarinota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Candidatus Altimarinota · 8 ✖

tax_clade 1

bioproject 1

  • PRJNA352850 · 8 ✖

analysis 1

  • blastn · 8 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2946362 2946362 PRJNA352850_P_NODE_43903_length_374_cov_1.249231_g41070_i0 PRJNA352850 43903 374 1.249231 4.67212394 Candidatus Gracilibacteria bacterium HOT-871 1540872 Bacteria Bacteria 239 2.55e-58   NTclustered gi|1275383184|gb|CP017714.1| 1540872 g41070 i0 79.251 0.927807486631016 347 68 92 4 8 352 825312 824968 Candidatus Gracilibacteria bacterium HOT-871, complete genome blastn 347 239 1 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Candidatus Gracilibacteria bacterium HOT-871
5498752 5498752 PRJNA352850_P_NODE_25225_length_551_cov_2.013944_g22406_i0 PRJNA352850 25225 551 2.013944 11.09683144 Candidatus Gracilibacteria bacterium 28_42_T64 1862133 Bacteria Bacteria 307 1.05e-78   NTclustered gi|1769783243|gb|CP042461.1| 1862133 g22406 i0 79.362 0.852994555353902 470 71 81 14 2 447 118125 118592 Candidatus Gracilibacteria bacterium 28_42_T64 chromosome, complete genome blastn 470 307 1 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Candidatus Gracilibacteria bacterium 28_42_T64
6773271 6773271 PRJNA352850_P_NODE_41926_length_387_cov_1.207101_g39094_i0 PRJNA352850 41926 387 1.207101 4.67148087 Candidatus Gracilibacteria bacterium 28_42_T64 1862133 Bacteria Bacteria 270 9.37e-68   NTclustered gi|1769783243|gb|CP042461.1| 1862133 g39094 i0 83.803 1.88113695090439 284 46 73 0 69 352 712582 712299 Candidatus Gracilibacteria bacterium 28_42_T64 chromosome, complete genome blastn 728 270 1 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Candidatus Gracilibacteria bacterium 28_42_T64
8048183 8048183 PRJNA352850_P_NODE_18347_length_692_cov_2.522551_g15626_i0 PRJNA352850 18347 692 2.522551 17.45605292 Candidatus Gracilibacteria bacterium HOT-871 1540872 Bacteria Bacteria 344 1.02e-89   NTclustered gi|1275383184|gb|CP017714.1| 1540872 g15626 i0 76.727 1.86849710982659 666 126 94 25 1 649 855794 855141 Candidatus Gracilibacteria bacterium HOT-871, complete genome blastn 1293 344 1 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Candidatus Gracilibacteria bacterium HOT-871
8049540 8049540 PRJNA352850_P_NODE_63207_length_289_cov_1.275000_g60374_i0 PRJNA352850 63207 289 1.275 3.68475 Candidatus Gracilibacteria bacterium 28_42_T64 1862133 Bacteria Bacteria 425 1.37e-114   NTclustered gi|1769783243|gb|CP042461.1| 1862133 g60374 i0 93.403 26.2906574394464 288 18 99 1 3 289 1249876 1250163 Candidatus Gracilibacteria bacterium 28_42_T64 chromosome, complete genome blastn 7598 425 1 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Candidatus Gracilibacteria bacterium 28_42_T64
14425230 14425230 PRJNA352850_P_NODE_67652_length_275_cov_1.353982_g64819_i0 PRJNA352850 67652 275 1.353982 3.7234505 Candidatus Gracilibacteria bacterium HOT-871 1540872 Bacteria Bacteria 195 3.97e-45   NTclustered gi|1275383184|gb|CP017714.1| 1540872 g64819 i0 81.897 0.843636363636364 232 40 84 2 5 235 912678 912908 Candidatus Gracilibacteria bacterium HOT-871, complete genome blastn 232 195 1 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Candidatus Gracilibacteria bacterium HOT-871
15699530 15699530 PRJNA352850_P_NODE_82133_length_246_cov_1.035533_g79300_i0 PRJNA352850 82133 246 1.035533 2.54741118 Candidatus Gracilibacteria bacterium 28_42_T64 1862133 Bacteria Bacteria 224 4.45e-54   NTclustered gi|1769783243|gb|CP042461.1| 1862133 g79300 i0 83.197 1.99593495934959 244 41 99 0 1 244 28971 28728 Candidatus Gracilibacteria bacterium 28_42_T64 chromosome, complete genome blastn 491 224 1 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Candidatus Gracilibacteria bacterium 28_42_T64
24620856 24620856 PRJNA352850_P_NODE_10580_length_1038_cov_2.612740_g8249_i0 PRJNA352850 10580 1038 2.61274 27.1202412 Candidatus Gracilibacteria bacterium 28_42_T64 1862133 Bacteria Bacteria 556 1.8299999999999998e-153   NTclustered gi|1769783243|gb|CP042461.1| 1862133 g8249 i0 77.154 11.7360308285164 1068 174 97 47 29 1038 88912 89967 Candidatus Gracilibacteria bacterium 28_42_T64 chromosome, complete genome blastn 12182 556 1 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Candidatus Gracilibacteria bacterium 28_42_T64

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;