RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA352850" and tax_phylum = "Campylobacterota"

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tax_superkingdom 1

tax_phylum 1

  • Campylobacterota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA352850 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2947283 2947283 PRJNA352850_P_NODE_73123_length_262_cov_1.854460_g70290_i0 PRJNA352850 73123 262 1.85446 4.8586852 Campylobacter sp. 19-13652 2840180 Bacteria Bacteria 65.8 3.07e-6   NTclustered gi|2052158881|dbj|AP024713.1| 2840180 g70290 i0 82.667 0.858778625954199 75 11 28 2 141 213 1151782 1151708 Campylobacter sp. 19-13652 DNA, complete genome blastn 225 65.8 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter sp. 19-13652
4223599 4223599 PRJNA352850_P_NODE_64384_length_285_cov_1.733051_g61551_i0 PRJNA352850 64384 285 1.733051 4.93919535 uncultured Campylobacterota bacterium 120858 Bacteria Bacteria 449 7.99e-122   NTclustered gi|219880899|gb|FJ535176.1| 120858 g61551 i0 95.088 99.9473684210526 285 14 100 0 1 285 1134 1418 Uncultured epsilon proteobacterium clone ATB-LH-5995 16S ribosomal RNA gene, partial sequence blastn 28485 449 1 Bacteria   Pseudomonadati Campylobacterota         uncultured Campylobacterota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;