RNAquarium Metadata Server
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contig_metadata

9 rows where analysis = "blastn", bioproject = "PRJNA352850" and tax_clade = "PVC group"

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tax_phylum 2

tax_superkingdom 1

tax_kingdom 1

tax_clade 1

  • PVC group · 9 ✖

bioproject 1

  • PRJNA352850 · 9 ✖

analysis 1

  • blastn · 9 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5499347 5499347 PRJNA352850_P_NODE_44525_length_370_cov_1.990654_g41692_i0 PRJNA352850 44525 370 1.990654 7.3654198 Candidatus Protochlamydia naegleriophila 389348 Bacteria Bacteria 667 0   NTclustered gi|971146634|emb|LN879502.1| 389348 g41692 i0 99.189 116.721621621622 370 3 100 0 1 370 1251066 1250697 Protochlamydia naegleriophila genome assembly PNK1, chromosome : cPNK blastn 43187 667 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Candidatus Protochlamydia Candidatus Protochlamydia naegleriophila
7449436 7449436 PRJNA352850_P_NODE_58986_length_304_cov_1.160784_g56153_i0 PRJNA352850 58986 304 1.160784 3.52878336 Frigoriglobus 2774146 Bacteria Bacteria 484 2.36e-132   NTclustered gi|2874253853|emb|OY969909.1| 1914239 g56153 i0 95.395 121.394736842105 304 14 100 0 1 304 2003450 2003753 MAG: uncultured Gemmataceae bacterium isolate MFD01275.bin.c.1 genome assembly, chromosome: 1 blastn 36904 484 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Gemmatales Gemmataceae   uncultured Gemmataceae bacterium
11875184 11875184 PRJNA352850_P_NODE_71550_length_265_cov_1.995370_g68717_i0 PRJNA352850 71550 265 1.99537 5.2877305 uncultured Planctomycetaceae bacterium 100233 Bacteria Bacteria 165 2.98e-36   NTclustered gi|2874254106|emb|OY970189.1| 100233 g68717 i0 90.4 0.471698113207547 125 12 47 0 138 262 7136708 7136832 MAG: uncultured Planctomycetaceae bacterium isolate MFD09603.bin.2.127 genome assembly, chromosome: 1 blastn 125 165 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Planctomycetales Planctomycetaceae   uncultured Planctomycetaceae bacterium
14423631 14423631 PRJNA352850_P_NODE_16072_length_762_cov_3.093969_g13426_i0 PRJNA352850 16072 762 3.093969 23.57604378 Candidatus Protochlamydia naegleriophila 389348 Bacteria Bacteria 1362 0   NTclustered gi|971146634|emb|LN879502.1| 389348 g13426 i0 98.95 125.863517060367 762 7 100 1 1 762 1249854 1249094 Protochlamydia naegleriophila genome assembly PNK1, chromosome : cPNK blastn 95908 1362 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Candidatus Protochlamydia Candidatus Protochlamydia naegleriophila
14424069 14424069 PRJNA352850_P_NODE_29752_length_491_cov_4.402715_g26924_i0 PRJNA352850 29752 491 4.402715 21.61733065 Candidatus Protochlamydia naegleriophila 389348 Bacteria Bacteria 902 0   NTclustered gi|971146634|emb|LN879502.1| 389348 g26924 i0 99.796 116.423625254582 491 1 100 0 1 491 1251125 1251615 Protochlamydia naegleriophila genome assembly PNK1, chromosome : cPNK blastn 57164 902 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Candidatus Protochlamydia Candidatus Protochlamydia naegleriophila
18922606 18922606 PRJNA352850_P_NODE_35015_length_438_cov_3.041131_g32184_i0 PRJNA352850 35015 438 3.041131 13.32015378 Planctomycetia 203683 Bacteria Bacteria 549 1.2299999999999994e-151   NTclustered gi|2874254106|emb|OY970189.1| 100233 g32184 i0 90.046 102.735159817352 432 31 96 6 5 426 5936808 5936379 MAG: uncultured Planctomycetaceae bacterium isolate MFD09603.bin.2.127 genome assembly, chromosome: 1 blastn 44998 549 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Planctomycetales Planctomycetaceae   uncultured Planctomycetaceae bacterium
20796271 20796271 PRJNA352850_P_NODE_16017_length_764_cov_2.689510_g13373_i0 PRJNA352850 16017 764 2.68951 20.5478564 Candidatus Protochlamydia naegleriophila 389348 Bacteria Bacteria 1373 0   NTclustered gi|971146634|emb|LN879502.1| 389348 g13373 i0 99.601 139.952879581152 752 3 98 0 13 764 1249889 1250640 Protochlamydia naegleriophila genome assembly PNK1, chromosome : cPNK blastn 106924 1373 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Candidatus Protochlamydia Candidatus Protochlamydia naegleriophila
22072815 22072815 PRJNA352850_P_NODE_62658_length_290_cov_4.290456_g59825_i0 PRJNA352850 62658 290 4.290456 12.4423224 uncultured Gemmataceae bacterium 1914239 Bacteria Bacteria 433 8.21e-117   NTclustered gi|2874253853|emb|OY969909.1| 1914239 g59825 i0 94.056 131.993103448276 286 16 98 1 3 287 2002489 2002774 MAG: uncultured Gemmataceae bacterium isolate MFD01275.bin.c.1 genome assembly, chromosome: 1 blastn 38278 433 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Gemmatales Gemmataceae   uncultured Gemmataceae bacterium
24621797 24621797 PRJNA352850_P_NODE_41360_length_390_cov_2.826979_g38528_i0 PRJNA352850 41360 390 2.826979 11.0252181 uncultured Phycisphaerales bacterium 904075 Bacteria Bacteria 470 8.679999999999999e-128   NTclustered gi|2874253847|emb|OY969903.1| 904075 g38528 i0 89.785 76.1512820512821 372 31 95 7 21 390 1831430 1831064 MAG: uncultured Phycisphaerales bacterium isolate MFD01213.bin.c.1 genome assembly, chromosome: 1 blastn 29699 470 1 Bacteria PVC group Pseudomonadati Planctomycetota Phycisphaerae Phycisphaerales     uncultured Phycisphaerales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;