RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA352610" and tax_phylum = "Rotifera"

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tax_superkingdom 1

tax_phylum 1

  • Rotifera · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA352610 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2944218 2944218 PRJNA352610_P_NODE_10483_length_363_cov_0.841379_g10422_i0 PRJNA352610 10483 363 0.841379 3.05420577 Lecane bulla 96446 Rotifera other_Eukaryota 649 0   NTclustered gi|167842611|gb|EU188928.1| 96446 g10422 i0 98.901 93.3939393939394 364 3 100 1 1 363 16 379 Lecane bulla isolate Cattail D cytochrome oxidase subunit I-like (cox1) gene, partial sequence; mitochondrial blastn 33902 649 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Lecanidae Lecane Lecane bulla
13147367 13147367 PRJNA352610_P_NODE_1771_length_705_cov_5.857595_g1714_i0 PRJNA352610 1771 705 5.857595 41.29604475 Proales similis 360698 Rotifera other_Eukaryota 577 9.399999999999997e-160   NTclustered gi|1859640894|gb|MN970216.1| 360698 g1714 i0 83.153 54.468085106383 647 93 91 15 48 686 11884 12522 Proales similis mitochondrion, complete genome blastn 38400 577 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Proalidae Proales Proales similis
15696308 15696308 PRJNA352610_P_NODE_15993_length_308_cov_1.974468_g15932_i0 PRJNA352610 15993 308 1.974468 6.08136144 Brachionus angularis 396692 Rotifera other_Eukaryota 320 7.14e-83   NTclustered gi|1999716438|gb|MT875426.1| 396692 g15932 i0 85.953 89.4577922077922 299 42 97 0 2 300 805 1103 Brachionus angularis chromosome II mitochondrion, complete sequence blastn 27553 320 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Brachionidae Brachionus Brachionus angularis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;