RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA352610" and tax_phylum = "Oomycota"

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tax_superkingdom 1

tax_phylum 1

  • Oomycota · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA352610 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
393856 393856 PRJNA352610_P_NODE_23101_length_262_cov_1.148148_g23040_i0 PRJNA352610 23101 262 1.148148 3.00814776 Peronospora belbahrii 622444 SAR_Eukaryotes SAR_Eukaryotes 159 1.37e-34   NTclustered gi|1590853183|gb|MH620960.1| 622444 g23040 i0 82.011 33.1641221374046 189 32 72 2 69 256 103 290 Peronospora belbahrii isolate HI01 beta-tubulin mRNA, complete cds blastn 8689 159 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Peronospora Peronospora belbahrii
393932 393932 PRJNA352610_P_NODE_26761_length_249_cov_0.875000_g26700_i0 PRJNA352610 26761 249 0.875 2.17875 Phytophthora cinnamomi 4785 SAR_Eukaryotes SAR_Eukaryotes 167 7.709999999999999e-37   NTclustered gi|2795041302|ref|XM_067930902.1| 4785 g26700 i0 80.455 21.4738955823293 220 41 88 2 23 241 1359 1141 Phytophthora cinnamomi CCR4-NOT transcription complex subunit 11 (IUM83_06675), partial mRNA blastn 5347 167 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi
19519807 19519807 PRJNA352610_P_NODE_31936_length_241_cov_0.916667_g31875_i0 PRJNA352610 31936 241 0.916667 2.20916747 Phytophthora ramorum 164328 SAR_Eukaryotes SAR_Eukaryotes 52.8 0.022   NTclustered gi|2794919753|ref|XM_067895242.1| 164328 g31875 i0 100 0.116182572614108 28 0 12 0 30 57 39 66 Phytophthora ramorum Choline transporter-like protein 1 (KRP23_9661), partial mRNA blastn 28 52.8 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora ramorum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;