RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA352610" and tax_phylum = "Bacillota"

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tax_superkingdom 1

tax_phylum 1

  • Bacillota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA352610 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
16971296 16971296 PRJNA352610_P_NODE_27994_length_247_cov_0.885057_g27933_i0 PRJNA352610 27994 247 0.885057 2.18609079 Streptococcus sp. Marseille-Q6470 2972784 Bacteria Bacteria 374 4.189999999999998e-99   NTclustered gi|2306632708|emb|OX336385.1| 2972784 g27933 i0 93.927 2.98785425101215 247 15 100 0 1 247 231626 231380 Streptococcus sp. Marseille-Q6470 genome assembly, chromosome: contig00001 blastn 738 374 1 Bacteria   Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus sp. Marseille-Q6470
22747411 22747411 PRJNA352610_P_NODE_11558_length_349_cov_1.054348_g11497_i0 PRJNA352610 11558 349 1.054348 3.67967452 Bacteria 2 Bacteria Bacteria 617 2.59e-172   NTclustered gi|1214725545|gb|CP022247.1| 1282 g11497 i0 98.567 476.054441260745 349 5 100 0 1 349 1787665 1787317 Staphylococcus epidermidis strain AMT chromosome, complete genome blastn 166143 617 1 Bacteria   Bacillati Bacillota Bacilli Bacillales Staphylococcaceae Staphylococcus Staphylococcus epidermidis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;