RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA352610" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 4 ✖

bioproject 1

  • PRJNA352610 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2944500 2944500 PRJNA352610_P_NODE_24083_length_256_cov_1.262295_g24022_i0 PRJNA352610 24083 256 1.262295 3.2314752 Neglectella solitaria 120749 Plants Plants 200 7.85e-47   NTclustered gi|229915396|gb|FJ968739.1| 120749 g24022 i0 82.328 44.11328125 232 39 90 2 6 236 52389 52159 Oocystis solitaria culture-collection SAG:83.80 chloroplast, partial genome blastn 11293 200 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Oocystaceae Neglectella Neglectella solitaria
11273761 11273761 PRJNA352610_P_NODE_4289_length_510_cov_0.853547_g4228_i0 PRJNA352610 4289 510 0.853547 4.3530897 root 1 Root_unresolved Root_unresolved 60.2 2.98e-4   NTclustered gi|2082268334|ref|XM_043071346.1| 3055 g4228 i0 97.222 6.3 36 0 7 1 464 499 233 267 Chlamydomonas reinhardtii uncharacterized protein (CHLRE_16g678000v5), mRNA blastn 3213 60.2 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
19519466 19519466 PRJNA352610_P_NODE_15216_length_315_cov_0.892562_g15155_i0 PRJNA352610 15216 315 0.892562 2.8115703 Chlamydomonas reinhardtii 3055 Plants Plants 291 5.7399999999999986e-74   NTclustered gi|2082259781|ref|XM_001690841.2| 3055 g15155 i0 84.642 95.2476190476191 293 44 93 1 1 292 259 551 Chlamydomonas reinhardtii uncharacterized protein (CHLRE_12g486250v5), mRNA blastn 30003 291 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
23345855 23345855 PRJNA352610_P_NODE_30279_length_243_cov_1.000000_g30218_i0 PRJNA352610 30279 243 1 2.43 Volvox carteri 3067 Plants Plants 58.4 4.71e-4   NTclustered gi|302851874|ref|XM_002957414.1| 3068 g30218 i0 97.143 0.374485596707819 35 0 14 1 18 51 7005 7039 Volvox carteri f. nagariensis uncharacterized protein (VOLCADRAFT_98515), partial mRNA blastn 91 58.4 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Volvocaceae Volvox Volvox carteri

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;