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contig_metadata

17 rows where analysis = "blastn", bioproject = "PRJNA348537" and tax_kingdom = "Pararnavirae"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Pararnavirae · 17 ✖

bioproject 1

  • PRJNA348537 · 17 ✖

analysis 1

  • blastn · 17 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
393538 393538 PRJNA348537_S_NODE_1_length_4308_cov_230.754505_g0_i0 PRJNA348537 1 4308 230.754505 9940.9040754 Avian myeloblastosis-associated virus 11960 Viruses Viruses 7574 0   NTclustered gi|407983|gb|L10922.1|MAVTYP1AAA 31669 g0 i0 98.398 99.897400185701 4308 69 100 0 1 4308 1234 5541 Avian myeloblastosis-associated virus type 1 env (env) and gag (gag) genes, complete cds; and pol (pol) gene, partial cds blastn 430358 7574 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Alpharetrovirus Avian myeloblastosis-associated virus
1070424 1070424 PRJNA348537_S_NODE_41_length_1097_cov_277.139360_g0_i7 PRJNA348537 41 1097 277.13936 3040.2187792 Alpharetrovirus 153057 Viruses Viruses 1873 0   NTclustered gi|407983|gb|L10922.1|MAVTYP1AAA 31669 g0 i7 98.584 96.4630811303555 1059 15 97 0 39 1097 4483 5541 Avian myeloblastosis-associated virus type 1 env (env) and gag (gag) genes, complete cds; and pol (pol) gene, partial cds blastn 105820 1884 0.99416135881104 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Alpharetrovirus Avian myeloblastosis-associated virus
2345775 2345775 PRJNA348537_S_NODE_2_length_4107_cov_221.834971_g0_i1 PRJNA348537 2 4107 221.834971 9110.76225897 Alpharetrovirus 153057 Viruses Viruses 6013 0   NTclustered gi|208429099|gb|FJ216405.1| 11864 g0 i1 96.485 93.4385196006818 3642 124 92 3 1 3639 3858 218 Avian leukosis virus strain SD07LK1, complete genome blastn 383752 6013 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Alpharetrovirus Alpharetrovirus avileu
4220748 4220748 PRJNA348537_S_NODE_4_length_3278_cov_227.782300_g0_i2 PRJNA348537 4 3278 227.7823 7466.703794 Avian myeloblastosis-associated virus 11960 Viruses Viruses 5690 0   NTclustered gi|407983|gb|L10922.1|MAVTYP1AAA 31669 g0 i2 98.276 99.117754728493 3249 56 99 0 1 3249 1234 4482 Avian myeloblastosis-associated virus type 1 env (env) and gag (gag) genes, complete cds; and pol (pol) gene, partial cds blastn 324908 5690 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Alpharetrovirus Avian myeloblastosis-associated virus
4898279 4898279 PRJNA348537_S_NODE_184_length_597_cov_127.309609_g142_i0 PRJNA348537 184 597 127.309609 760.03836573 Alpharetrovirus 153057 Viruses Viruses 878 0   NTclustered gi|407979|gb|L10923.1|MAVTYP1A2A 31668 g142 i0 96.774 79.462311557789 527 16 99 1 4 530 682 157 Myeloblastosis-associated virus type 1/2 env gene, complete cds; gag gene, complete cds; pol gene, 3' end of cds blastn 47439 878 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Alpharetrovirus Avian myeloblastosis-associated virus
5497131 5497131 PRJNA348537_S_NODE_5_length_2910_cov_240.260174_g0_i3 PRJNA348537 5 2910 240.260174 6991.5710634 Avian myeloblastosis-associated virus 11960 Viruses Viruses 4691 0   NTclustered gi|407983|gb|L10922.1|MAVTYP1AAA 31669 g0 i3 98.176 99.2783505154639 2687 49 100 0 224 2910 3920 1234 Avian myeloblastosis-associated virus type 1 env (env) and gag (gag) genes, complete cds; and pol (pol) gene, partial cds blastn 288900 4691 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Alpharetrovirus Avian myeloblastosis-associated virus
6771123 6771123 PRJNA348537_S_NODE_46_length_1034_cov_288.857858_g0_i8 PRJNA348537 46 1034 288.857858 2986.79025172 Alpharetrovirus avileu 3426267 Viruses Viruses 1301 0   NTclustered gi|86371630|gb|DQ365814.1| 11864 g0 i8 95.072 87.3094777562863 832 31 80 8 39 864 1009 182 Avian leukosis virus strain MQNCSU, complete genome blastn 90278 1301 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Alpharetrovirus Alpharetrovirus avileu
6771126 6771126 PRJNA348537_S_NODE_6_length_2762_cov_205.351669_g0_i4 PRJNA348537 6 2762 205.351669 5671.81309778 Avian myeloblastosis-associated virus 11960 Viruses Viruses 4732 0   NTclustered gi|407983|gb|L10922.1|MAVTYP1AAA 31669 g0 i4 98.156 98.1904417089066 2712 50 98 0 1 2712 3920 1209 Avian myeloblastosis-associated virus type 1 env (env) and gag (gag) genes, complete cds; and pol (pol) gene, partial cds blastn 271202 4732 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Alpharetrovirus Avian myeloblastosis-associated virus
9321515 9321515 PRJNA348537_S_NODE_8_length_2484_cov_187.882809_g2_i0 PRJNA348537 8 2484 187.882809 4667.00897556 Avian myeloblastosis-associated virus 11960 Viruses Viruses 3788 0   NTclustered gi|407987|gb|L10924.1|MAVTYP2AAA 31670 g2 i0 94.961 83.9480676328502 2441 81 100 5 1 2438 5324 7725 Myeloblastosis-associated virus type 2 env gene, complete cds; gag gene, complete cds; pol gene, 3' end of cds blastn 208527 3788 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Alpharetrovirus Avian myeloblastosis-associated virus
10597213 10597213 PRJNA348537_S_NODE_29_length_1309_cov_269.542386_g0_i5 PRJNA348537 29 1309 269.542386 3528.30983274 Alpharetrovirus avileu 3426267 Viruses Viruses 1301 0   NTclustered gi|86371630|gb|DQ365814.1| 11864 g0 i5 95.072 78.524064171123 832 31 66 8 446 1271 182 1009 Avian leukosis virus strain MQNCSU, complete genome blastn 102788 1301 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Alpharetrovirus Alpharetrovirus avileu
10597220 10597220 PRJNA348537_S_NODE_9_length_2090_cov_147.224331_g2_i1 PRJNA348537 9 2090 147.224331 3076.9885179 Avian myeloblastosis-associated virus 11960 Viruses Viruses 3153 0   NTclustered gi|407987|gb|L10924.1|MAVTYP2AAA 31670 g2 i1 94.902 87.044019138756 2040 63 99 4 1 2037 5512 7513 Myeloblastosis-associated virus type 2 env gene, complete cds; gag gene, complete cds; pol gene, 3' end of cds blastn 181922 3153 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Alpharetrovirus Avian myeloblastosis-associated virus
12548954 12548954 PRJNA348537_S_NODE_4190_length_156_cov_4.669421_g4144_i0 PRJNA348537 4190 156 4.669421 7.28429676 Alpharetrovirus 153057 Viruses Viruses 257 2.54e-64   NTclustered gi|108737103|ref|NC_008094.1| 11884 g4144 i0 97.351 10.6474358974359 151 4 97 0 1 151 3349 3199 Y73 sarcoma virus, complete genome blastn 1661 257 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Alpharetrovirus Alpharetrovirus aviY73sar
18921890 18921890 PRJNA348537_S_NODE_155_length_644_cov_148.443350_g116_i0 PRJNA348537 155 644 148.44335 955.975174 Alpharetrovirus 153057 Viruses Viruses 743 0   NTclustered gi|407979|gb|L10923.1|MAVTYP1A2A 31668 g116 i0 91.213 62.1645962732919 569 16 95 4 30 598 7169 7703 Myeloblastosis-associated virus type 1/2 env gene, complete cds; gag gene, complete cds; pol gene, 3' end of cds blastn 40034 749 0.991989319092123 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Alpharetrovirus Avian myeloblastosis-associated virus
19519299 19519299 PRJNA348537_S_NODE_56_length_970_cov_289.562567_g2_i3 PRJNA348537 56 970 289.562567 2808.7568999 Avian myeloblastosis-associated virus 11960 Viruses Viruses 935 0   NTclustered gi|407987|gb|L10924.1|MAVTYP2AAA 31670 g2 i3 92.593 74.4958762886598 675 12 99 2 243 917 6877 7513 Myeloblastosis-associated virus type 2 env gene, complete cds; gag gene, complete cds; pol gene, 3' end of cds blastn 72261 935 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Alpharetrovirus Avian myeloblastosis-associated virus
20794882 20794882 PRJNA348537_S_NODE_37_length_1180_cov_254.467249_g0_i6 PRJNA348537 37 1180 254.467249 3002.7135382 Alpharetrovirus avileu 3426267 Viruses Viruses 1598 0   NTclustered gi|208429099|gb|FJ216405.1| 11864 g0 i6 95.859 92.0025423728814 990 37 84 3 1 987 1206 218 Avian leukosis virus strain SD07LK1, complete genome blastn 108563 1598 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Alpharetrovirus Alpharetrovirus avileu
22747359 22747359 PRJNA348537_S_NODE_38_length_1176_cov_259.481157_g2_i2 PRJNA348537 38 1176 259.481157 3051.49840632 Alpharetrovirus 153057 Viruses Viruses 1238 0   NTclustered gi|407979|gb|L10923.1|MAVTYP1A2A 31668 g2 i2 92.568 69.4464285714286 888 27 100 3 47 934 7703 6855 Myeloblastosis-associated virus type 1/2 env gene, complete cds; gag gene, complete cds; pol gene, 3' end of cds blastn 81669 1249 0.991192954363491 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Alpharetrovirus Avian myeloblastosis-associated virus
25296663 25296663 PRJNA348537_S_NODE_80_length_872_cov_150.986858_g53_i0 PRJNA348537 80 872 150.986858 1316.60540176 Alpharetrovirus 153057 Viruses Viruses 1066 0   NTclustered gi|407979|gb|L10923.1|MAVTYP1A2A 31668 g53 i0 94.676 67.3543577981651 695 24 96 2 4 698 682 1 Myeloblastosis-associated virus type 1/2 env gene, complete cds; gag gene, complete cds; pol gene, 3' end of cds blastn 58733 1066 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Alpharetrovirus Avian myeloblastosis-associated virus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;