RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA348537" and tax_clade = "Methanomada group"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • Methanomada group · 3 ✖

bioproject 1

  • PRJNA348537 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8722970 8722970 PRJNA348537_S_NODE_1327_length_251_cov_109.370370_g1281_i0 PRJNA348537 1327 251 109.37037 274.5196287 Methanococcus 2184 Archaea Archaea 137 6.100000000000001e-28   NTclustered gi|2891706660|gb|CP178162.1| 39152 g1281 i0 98.701 2.44621513944223 77 1 31 0 175 251 1469921 1469845 Methanococcus maripaludis strain LL chromosome, complete genome blastn 614 137 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanococci Methanococcales Methanococcaceae Methanococcus Methanococcus maripaludis
8722973 8722973 PRJNA348537_S_NODE_1547_length_234_cov_249.788945_g1501_i0 PRJNA348537 1547 234 249.788945 584.5061313 Methanococcus 2184 Archaea Archaea 137 5.62e-28   NTclustered gi|2891706660|gb|CP178162.1| 39152 g1501 i0 98.701 2.62393162393162 77 1 33 0 158 234 1469921 1469845 Methanococcus maripaludis strain LL chromosome, complete genome blastn 614 137 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanococci Methanococcales Methanococcaceae Methanococcus Methanococcus maripaludis
24022222 24022222 PRJNA348537_S_NODE_4419_length_153_cov_74.542373_g4373_i0 PRJNA348537 4419 153 74.542373 114.04983069 Methanococcus 2184 Archaea Archaea 161 2e-35   NTclustered gi|2891706660|gb|CP178162.1| 39152 g4373 i0 98.889 5.25490196078431 90 1 59 0 32 121 1469921 1469832 Methanococcus maripaludis strain LL chromosome, complete genome blastn 804 161 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanococci Methanococcales Methanococcaceae Methanococcus Methanococcus maripaludis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;