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contig_metadata

32 rows where analysis = "blastn", bioproject = "PRJNA348537" and tax_clade = "Embryophyta"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • Embryophyta · 32 ✖

bioproject 1

  • PRJNA348537 · 32 ✖

analysis 1

  • blastn · 32 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2345772 2345772 PRJNA348537_S_NODE_2042_length_208_cov_3.086705_g1996_i0 PRJNA348537 2042 208 3.086705 6.4203464 Magnoliopsida 3398 Plants Plants 379 7.359999999999998e-101   NTclustered gi|2839189188|ref|XR_011219215.1| 4081 g1996 i0 100 98.5576923076923 205 0 99 0 4 208 2067 1863 PREDICTED: Solanum lycopersicum 28S ribosomal RNA (LOC138346485), rRNA blastn 20500 379 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Solanales Solanaceae Solanum Solanum lycopersicum
4220740 4220740 PRJNA348537_S_NODE_2104_length_206_cov_1.210526_g2058_i0 PRJNA348537 2104 206 1.210526 2.49368356 Nicotiana tomentosiformis 4098 Plants Plants 191 3.66e-44   NTclustered gi|2865053534|ref|XM_070195550.1| 4098 g2058 i0 83.902 0.995145631067961 205 27 97 6 1 200 1397 1600 PREDICTED: Nicotiana tomentosiformis transcriptional corepressor LEUNIG-like (LOC104086730), transcript variant X3, mRNA blastn 205 191 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Solanales Solanaceae Nicotiana Nicotiana tomentosiformis
4898298 4898298 PRJNA348537_S_NODE_844_length_308_cov_20.915751_g798_i0 PRJNA348537 844 308 20.915751 64.42051308 Nicotiana 4085 Plants Plants 558 1.39e-154   NTclustered gi|19919613|gb|AF479172.1| 4097 g798 i0 99.351 100 308 2 100 0 1 308 827 520 Nicotiana tabacum 26S ribosomal RNA gene, complete sequence blastn 30800 558 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Solanales Solanaceae Nicotiana Nicotiana tabacum
5497129 5497129 PRJNA348537_S_NODE_4585_length_151_cov_15.715517_g4539_i0 PRJNA348537 4585 151 15.715517 23.73043067 Solanum lycopersicum 4081 Plants Plants 279 5.19e-71   NTclustered gi|2839189188|ref|XR_011219215.1| 4081 g4539 i0 100 100 151 0 100 0 1 151 1301 1451 PREDICTED: Solanum lycopersicum 28S ribosomal RNA (LOC138346485), rRNA blastn 15100 279 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Solanales Solanaceae Solanum Solanum lycopersicum
7448307 7448307 PRJNA348537_S_NODE_446_length_407_cov_26.556452_g400_i0 PRJNA348537 446 407 26.556452 108.08475964 Eukaryota 2759 Plants Plants 741 0   NTclustered gi|14091693|gb|AF375999.1|AF375999 4092 g400 i0 99.509 100.211302211302 407 2 100 0 1 407 179 585 Nicotiana plumbaginifolia 25S ribosomal RNA gene, partial sequence blastn 40786 741 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Solanales Solanaceae Nicotiana Nicotiana plumbaginifolia
8046759 8046759 PRJNA348537_S_NODE_2807_length_184_cov_1.127517_g2761_i0 PRJNA348537 2807 184 1.127517 2.07463128 Nicotiana sylvestris 4096 Plants Plants 207 3.16e-49   NTclustered gi|2864951290|ref|XR_011405372.1| 4096 g2761 i0 98.305 5.77173913043478 118 2 64 0 67 184 9 126 PREDICTED: Nicotiana sylvestris uncharacterized protein (LOC104217447), transcript variant X16, misc_RNA blastn 1062 207 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Solanales Solanaceae Nicotiana Nicotiana sylvestris
8722986 8722986 PRJNA348537_S_NODE_387_length_434_cov_4.781955_g341_i0 PRJNA348537 387 434 4.781955 20.7536847 Magnoliopsida 3398 Plants Plants 802 0   NTclustered gi|1495829520|gb|MH559329.1| 4072 g341 i0 100 200 434 0 100 0 1 434 109748 109315 Capsicum annuum isolate ann3 chloroplast, complete genome blastn 86800 802 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Solanales Solanaceae Capsicum Capsicum annuum
9321487 9321487 PRJNA348537_S_NODE_1348_length_250_cov_8.488372_g1302_i0 PRJNA348537 1348 250 8.488372 21.22093 Luculia yunnanensis 1043446 Plants Plants 52.8 0.023   NTclustered gi|363453795|gb|JN871303.1| 1043446 g1302 i0 96.774 0.124 31 1 12 0 182 212 89 59 Luculia yunnanensis clone MH8 microsatellite sequence blastn 31 52.8 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Gentianales Rubiaceae Luculia Luculia yunnanensis
9998601 9998601 PRJNA348537_S_NODE_3728_length_163_cov_17.671875_g3682_i0 PRJNA348537 3728 163 17.671875 28.80515625 Magnoliopsida 3398 Plants Plants 292 7.35e-75   NTclustered gi|1049329|gb|U38318.1|CFU38318 3429 g3682 i0 99.379 98.7791411042945 161 1 99 0 3 163 961 1121 Calycanthus floridus 18S ribosomal RNA gene, partial sequence blastn 16101 294 0.993197278911565 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Laurales Calycanthaceae Calycanthus Calycanthus floridus
9998605 9998605 PRJNA348537_S_NODE_4588_length_151_cov_12.068966_g4542_i0 PRJNA348537 4588 151 12.068966 18.22413866 Triticum 4564 Plants Plants 279 5.19e-71   NTclustered gi|2123606590|ref|XR_006476302.1| 4565 g4542 i0 100 2399.19205298013 151 0 100 0 1 151 3341 3191 PREDICTED: Triticum aestivum 28S ribosomal RNA (LOC123152693), rRNA blastn 362278 279 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Triticum Triticum aestivum
11273640 11273640 PRJNA348537_S_NODE_749_length_324_cov_22.896194_g703_i0 PRJNA348537 749 324 22.896194 74.18366856 root 1 Root_unresolved Root_unresolved 599 8.67e-167   NTclustered gi|823227643|gb|KM582842.1| 2711 g703 i0 100 191.006172839506 324 0 100 0 1 324 485 162 Citrus sinensis isolate RM13_Hh1 clone RM13_Hh1-3 16S ribosomal RNA gene, partial sequence; chloroplast blastn 61886 599 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Sapindales Rutaceae Citrus Citrus sinensis
12548941 12548941 PRJNA348537_S_NODE_1250_length_259_cov_11.500000_g1204_i0 PRJNA348537 1250 259 11.5 29.785 Magnoliopsida 3398 Plants Plants 381 2.6499999999999995e-101   NTclustered gi|2839187510|ref|XR_011217537.1| 4081 g1204 i0 93.701 99.0617760617761 254 16 98 0 6 259 1196 1449 PREDICTED: Solanum lycopersicum 18S ribosomal RNA (LOC138344767), rRNA blastn 25657 381 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Solanales Solanaceae Solanum Solanum lycopersicum
12548942 12548942 PRJNA348537_S_NODE_170_length_611_cov_4.076389_g129_i0 PRJNA348537 170 611 4.076389 24.90673679 root 1 Root_unresolved Root_unresolved 1110 0   NTclustered gi|657302675|ref|NC_024261.1| 4079 g129 i0 99.834 195.731587561375 604 1 99 0 8 611 106979 107582 Hyoscyamus niger chloroplast, complete genome blastn 119592 1116 0.99462365591397806 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Solanales Solanaceae Hyoscyamus Hyoscyamus niger
12548955 12548955 PRJNA348537_S_NODE_4350_length_154_cov_5.705882_g4304_i0 PRJNA348537 4350 154 5.705882 8.78705828 Solanaceae 4070 Plants Plants 239 9.04e-59   NTclustered gi|2217019617|ref|XR_007051663.1| 4072 g4304 i0 100 83.7857142857143 129 0 84 0 1 129 1635 1763 PREDICTED: Capsicum annuum 18S ribosomal RNA (LOC124895330), rRNA blastn 12903 239 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Solanales Solanaceae Capsicum Capsicum annuum
12548960 12548960 PRJNA348537_S_NODE_990_length_290_cov_10.952941_g944_i0 PRJNA348537 990 290 10.952941 31.7635289 root 1 Root_unresolved Root_unresolved 536 6.079999999999999e-148   NTclustered gi|2273789310|gb|MZ391807.1| 3635 g944 i0 100 194 290 0 100 0 1 290 105910 105621 Gossypium hirsutum voucher L_oaxbrown4 chloroplast, complete genome blastn 56260 536 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Malvales Malvaceae Gossypium Gossypium hirsutum
13147126 13147126 PRJNA348537_S_NODE_4291_length_155_cov_1.525000_g4245_i0 PRJNA348537 4291 155 1.525 2.36375 Triticum aestivum 4565 Plants Plants 204 3.32e-48   NTclustered gi|300681419|emb|FN564427.1| 4565 g4245 i0 95.42 266.490322580645 131 1 82 3 28 153 390045 390175 Triticum aestivum chromosome 3B-specific BAC library, contig ctg0079b blastn 41306 204 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Triticum Triticum aestivum
13823890 13823890 PRJNA348537_S_NODE_2291_length_199_cov_12.670732_g2245_i0 PRJNA348537 2291 199 12.670732 25.21475668 Eukaryota 2759 Plants Plants 350 5.47e-92   NTclustered gi|780981400|gb|KM117266.1| 4529 g2245 i0 98.485 2377.63316582915 198 3 99 0 1 198 3043 3240 Oryza rufipogon 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 26S ribosomal RNA gene, complete sequence blastn 473149 351 0.997150997150997 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Oryza Oryza rufipogon
13823893 13823893 PRJNA348537_S_NODE_271_length_510_cov_10.425263_g227_i0 PRJNA348537 271 510 10.425263 53.1688413 root 1 Root_unresolved Root_unresolved 870 0   NTclustered gi|2864333443|gb|PQ677101.1| 4058 g227 i0 99.581 157.905882352941 477 2 94 0 1 477 106242 105766 Catharanthus roseus isolate F.K.P chloroplast, complete genome blastn 80532 876 0.993150684931507 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Gentianales Apocynaceae Catharanthus Catharanthus roseus
13823896 13823896 PRJNA348537_S_NODE_3431_length_169_cov_2.313433_g3385_i0 PRJNA348537 3431 169 2.313433 3.90970177 Nicotiana 4085 Plants Plants 296 5.9e-76   NTclustered gi|1040699|dbj|D76443.1|TOBSR1 4097 g3385 i0 99.387 3.25443786982249 163 1 96 0 1 163 1548 1710 Nicotiana tabacum gene for rRNA, intergenic spacer region blastn 550 296 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Solanales Solanaceae Nicotiana Nicotiana tabacum
15098232 15098232 PRJNA348537_S_NODE_2972_length_179_cov_8.840278_g2926_i0 PRJNA348537 2972 179 8.840278 15.82409762 Eukaryota 2759 Plants Plants 331 1.74e-86   NTclustered gi|2865114781|ref|XR_011411386.1| 4098 g2926 i0 100 100 179 0 100 0 1 179 1145 967 PREDICTED: Nicotiana tomentosiformis 28S ribosomal RNA (LOC138899636), rRNA blastn 17900 331 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Solanales Solanaceae Nicotiana Nicotiana tomentosiformis
15696125 15696125 PRJNA348537_S_NODE_1813_length_218_cov_6.661202_g1767_i0 PRJNA348537 1813 218 6.661202 14.52142036 Nicotiana tabacum 4097 Plants Plants 375 1.0099999999999998e-99   NTclustered gi|19876|emb|X15068.1| 4097 g1767 i0 97.706 11.4357798165138 218 5 100 0 1 218 278 61 Nicotiana tabacum BamHI repeat element DNA blastn 2493 375 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Solanales Solanaceae Nicotiana Nicotiana tabacum
15696127 15696127 PRJNA348537_S_NODE_193_length_580_cov_20.007339_g151_i0 PRJNA348537 193 580 20.007339 116.0425662 Nicotiana tomentosiformis 4098 Plants Plants 1031 0   NTclustered gi|2865114781|ref|XR_011411386.1| 4098 g151 i0 99.127 98.6741379310345 573 5 99 0 8 580 1 573 PREDICTED: Nicotiana tomentosiformis 28S ribosomal RNA (LOC138899636), rRNA blastn 57231 1031 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Solanales Solanaceae Nicotiana Nicotiana tomentosiformis
16372979 16372979 PRJNA348537_S_NODE_1853_length_216_cov_14292.895028_g1807_i0 PRJNA348537 1853 216 14292.895028 30872.65326048 root 1 Root_unresolved Root_unresolved 73.1 1.46e-8   NTclustered gi|1084358394|gb|KT895870.1| 29730 g1807 i0 95.652 20.3796296296296 46 1 21 1 4 49 7 51 Gossypium raimondii isolate Gr87 retrotransposon Ty3, complete sequence blastn 4402 73.1 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Malvales Malvaceae Gossypium Gossypium raimondii
17648071 17648071 PRJNA348537_S_NODE_754_length_323_cov_34.690972_g708_i0 PRJNA348537 754 323 34.690972 112.05183956 Eukaryota 2759 Plants Plants 575 1.4599999999999995e-159   NTclustered gi|2839186380|ref|XR_011216406.1| 4081 g708 i0 98.762 101 323 4 100 0 1 323 622 944 PREDICTED: Solanum lycopersicum 18S ribosomal RNA (LOC138343611), rRNA blastn 32623 580 0.991379310344828 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Solanales Solanaceae Solanum Solanum lycopersicum
20196493 20196493 PRJNA348537_S_NODE_1116_length_275_cov_3.725000_g1070_i0 PRJNA348537 1116 275 3.725 10.24375 Nicotiana 4085 Plants Plants 483 7.559999999999998e-132   NTclustered gi|14091693|gb|AF375999.1|AF375999 4092 g1070 i0 98.889 98.16 270 3 98 0 2 271 1055 786 Nicotiana plumbaginifolia 25S ribosomal RNA gene, partial sequence blastn 26994 483 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Solanales Solanaceae Nicotiana Nicotiana plumbaginifolia
21472141 21472141 PRJNA348537_S_NODE_217_length_556_cov_7.702495_g174_i0 PRJNA348537 217 556 7.702495 42.8258722 root 1 Root_unresolved Root_unresolved 985 0   NTclustered gi|1996569907|dbj|LC613098.1| 4081 g174 i0 99.813 191.924460431655 536 1 97 0 21 556 59052 58517 Solanum lycopersicum O chloroplast DNA, contig: OCp001, partial sequence blastn 106710 990 0.994949494949495 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Solanales Solanaceae Solanum Solanum lycopersicum
22069972 22069972 PRJNA348537_S_NODE_898_length_301_cov_16.669173_g852_i0 PRJNA348537 898 301 16.669173 50.17421073 Solanum lycopersicum 4081 Plants Plants 551 2.2699999999999992e-152   NTclustered gi|2839187704|ref|XR_011217731.1| 4081 g852 i0 99.668 101 301 1 100 0 1 301 90 390 PREDICTED: Solanum lycopersicum 18S ribosomal RNA (LOC138344966), rRNA blastn 30401 551 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Solanales Solanaceae Solanum Solanum lycopersicum
23345415 23345415 PRJNA348537_S_NODE_3439_length_169_cov_1.007463_g3393_i0 PRJNA348537 3439 169 1.007463 1.70261247 Nicotiana sylvestris 4096 Plants Plants 241 2.81e-59   NTclustered gi|2865008284|ref|XM_070156730.1| 4096 g3393 i0 92.308 25.9526627218935 169 13 100 0 1 169 1961 2129 PREDICTED: Nicotiana sylvestris uncharacterized protein (LOC104221879), transcript variant X3, mRNA blastn 4386 241 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Solanales Solanaceae Nicotiana Nicotiana sylvestris
24022218 24022218 PRJNA348537_S_NODE_339_length_463_cov_5907.315421_g294_i0 PRJNA348537 339 463 5907.315421 27350.87039923 Eukaryota 2759 Plants Plants 761 0   NTclustered gi|2864934482|ref|XR_011404725.1| 4096 g294 i0 98.832 92.4406047516199 428 4 92 1 4 431 1484 1910 PREDICTED: Nicotiana sylvestris 28S ribosomal RNA (LOC138884684), rRNA blastn 42800 761 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Solanales Solanaceae Nicotiana Nicotiana sylvestris
24619657 24619657 PRJNA348537_S_NODE_1140_length_272_cov_26.729958_g1094_i0 PRJNA348537 1140 272 26.729958 72.70548576 Tripterygium wilfordii 458696 Plants Plants 381 2.8e-101   NTclustered gi|1954687436|ref|XR_005464710.1| 458696 g1094 i0 93.077 93.4375 260 18 96 0 8 267 1218 959 PREDICTED: Tripterygium wilfordii 28S ribosomal RNA (LOC119983724), rRNA blastn 25415 381 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Celastrales Celastraceae Tripterygium Tripterygium wilfordii
24619662 24619662 PRJNA348537_S_NODE_2040_length_208_cov_3.115607_g1994_i0 PRJNA348537 2040 208 3.115607 6.48046256 Zea mays 4577 Plants Plants 329 7.52e-86   NTclustered gi|168504|gb|M35408.1|MZEHETRO 4577 g1994 i0 98.913 44.3942307692308 184 2 88 0 25 208 184 1 Corn heterochromatin repetitive DNA blastn 9234 329 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Zea Zea mays
24619668 24619668 PRJNA348537_S_NODE_4000_length_159_cov_1.443548_g3954_i0 PRJNA348537 4000 159 1.443548 2.29524132 Nicotiana tabacum 4097 Plants Plants 200 4.439999999999999e-47   NTclustered gi|2735218035|gb|OR400938.1| 4097 g3954 i0 97.436 49.1320754716981 117 3 74 0 38 154 3670 3786 Nicotiana tabacum isolate Nta-TN90-S-F S-ribonuclease gene, complete cds blastn 7812 200 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Solanales Solanaceae Nicotiana Nicotiana tabacum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;