RNAquarium Metadata Server
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contig_metadata

8 rows where analysis = "blastn", bioproject = "PRJNA345071" and tax_phylum = "Rotifera"

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tax_superkingdom 1

tax_phylum 1

  • Rotifera · 8 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA345071 · 8 ✖

analysis 1

  • blastn · 8 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
393442 393442 PRJNA345071_P_NODE_581_length_652_cov_3.150259_g541_i0 PRJNA345071 581 652 3.150259 20.53968868 Asplanchna brightwellii 2005548 Rotifera other_Eukaryota 333 2.0700000000000002e-86   NTclustered gi|2906176134|gb|PV021768.1| 2005548 g541 i0 79.276 3.55674846625767 497 87 75 15 99 587 6207 5719 Asplanchna brightwellii chromosome II mitochondrion, complete sequence blastn 2319 333 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Asplanchnidae Asplanchna Asplanchna brightwellii
4220588 4220588 PRJNA345071_P_NODE_324_length_817_cov_2.764785_g287_i0 PRJNA345071 324 817 2.764785 22.58829345 Brachionus calyciflorus 104777 Rotifera other_Eukaryota 678 0   NTclustered gi|403082251|gb|JX463650.1| 104777 g287 i0 82.256 85.265605875153 789 136 96 4 1 787 811 25 Brachionus calyciflorus cytochrome c oxidase subunit 1 (COX1) gene, partial cds; mitochondrial blastn 69662 678 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Brachionidae Brachionus Brachionus calyciflorus
8046635 8046635 PRJNA345071_P_NODE_487_length_701_cov_13.527070_g448_i0 PRJNA345071 487 701 13.52707 94.8247607 Brachionus rubens 392764 Rotifera other_Eukaryota 486 1.62e-132   NTclustered gi|1802791198|gb|MN256531.1| 392764 g448 i0 81.211 39.9144079885877 644 85 89 26 1 625 11821 11195 Brachionus rubens chromosome I mitochondrion, complete sequence blastn 27980 486 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Brachionidae Brachionus Brachionus rubens
10597107 10597107 PRJNA345071_P_NODE_549_length_666_cov_2.458685_g509_i0 PRJNA345071 549 666 2.458685 16.3748421 Proales similis 360698 Rotifera other_Eukaryota 520 1.5099999999999999e-142   NTclustered gi|1859640894|gb|MN970216.1| 360698 g509 i0 81.045 57.1801801801802 670 112 99 15 3 666 11803 12463 Proales similis mitochondrion, complete genome blastn 38082 520 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Proalidae Proales Proales similis
15695908 15695908 PRJNA345071_P_NODE_133_length_1125_cov_32.077947_g116_i0 PRJNA345071 133 1125 32.077947 360.87690375 Asplanchna sp. 3231738 Rotifera other_Eukaryota 433 3.5e-116   NTclustered gi|2778092479|gb|PP988071.1| 3231738 g116 i0 75.556 14.6568888888889 1035 170 88 72 11 1005 2406 1415 Asplanchna sp. chromosome I mitochondrion, complete sequence blastn 16489 433 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Asplanchnidae Asplanchna Asplanchna sp.
15695920 15695920 PRJNA345071_P_NODE_1913_length_407_cov_1.383234_g1873_i0 PRJNA345071 1913 407 1.383234 5.62976238 Lepadella patella 231622 Rotifera other_Eukaryota 558 1.89e-154   NTclustered gi|83285192|gb|DQ297739.1| 231622 g1873 i0 91.443 65.4299754299754 409 32 100 3 1 407 733 326 Lepadella patella 28S ribosomal RNA gene, partial sequence blastn 26630 558 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Lepadellidae Lepadella Lepadella patella
18244922 18244922 PRJNA345071_P_NODE_4535_length_299_cov_1.672566_g4495_i0 PRJNA345071 4535 299 1.672566 5.00097234 Brachionus rubens 392764 Rotifera other_Eukaryota 130 1.25e-25   NTclustered gi|1802791198|gb|MN256531.1| 392764 g4495 i0 80.226 35.8929765886288 177 32 59 3 125 299 11252 11427 Brachionus rubens chromosome I mitochondrion, complete sequence blastn 10732 130 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Brachionidae Brachionus Brachionus rubens
23345199 23345199 PRJNA345071_P_NODE_179_length_1043_cov_1.725773_g155_i0 PRJNA345071 179 1043 1.725773 17.99981239 Brachionus rubens 392764 Rotifera other_Eukaryota 795 0   NTclustered gi|1802791203|gb|MN256532.1| 392764 g155 i0 80.516 54.8350910834132 1047 194 99 10 1 1042 1216 175 Brachionus rubens chromosome II mitochondrion, complete sequence blastn 57193 795 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Brachionidae Brachionus Brachionus rubens

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;