RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA345071" and tax_phylum = "Oomycota"

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tax_superkingdom 1

tax_phylum 1

  • Oomycota · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA345071 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4898253 4898253 PRJNA345071_P_NODE_8384_length_250_cov_0.881356_g8344_i0 PRJNA345071 8384 250 0.881356 2.20339 Phytophthora 4783 SAR_Eukaryotes SAR_Eukaryotes 219 2.11e-52   NTclustered gi|2795025992|ref|XM_067924992.1| 4785 g8344 i0 82.996 79.084 247 36 98 6 7 250 693 936 Phytophthora cinnamomi chaperonin GroL (IUM83_01160), partial mRNA blastn 19771 219 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi
9998551 9998551 PRJNA345071_P_NODE_1808_length_416_cov_3.518950_g1768_i0 PRJNA345071 1808 416 3.51895 14.638832 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 278 6.060000000000001e-70   NTclustered gi|23394353|gb|AF424642.1| 4787 g1768 i0 80.886 50.9855769230769 361 62 86 5 53 411 144 499 Phytophthora infestans clone MY-03-E-01 ADP/ATP translocase mRNA, complete cds blastn 21210 278 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora infestans

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;