RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA345071" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA345071 · 2 ✖

analysis 1

  • blastn · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2943930 2943930 PRJNA345071_P_NODE_11303_length_227_cov_2.084416_g11263_i0 PRJNA345071 11303 227 2.084416 4.73162432 Caenorhabditis remanei 31234 Nematoda Nematoda 78.7 3.34e-10   NTclustered gi|2445352248|ref|XM_053723719.1| 31234 g11263 i0 89.231 0.850220264317181 65 4 28 3 155 217 282 219 Caenorhabditis remanei uncharacterized protein (GCK72_002963), partial mRNA blastn 193 78.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis remanei
24619603 24619603 PRJNA345071_P_NODE_7720_length_253_cov_0.866667_g7680_i0 PRJNA345071 7720 253 0.866667 2.19266751 Dirofilaria immitis 6287 Nematoda Nematoda 80.5 1.05e-10   NTclustered gi|1774710611|gb|MK820661.1| 6287 g7680 i0 90.164 1.8102766798419 61 6 24 0 183 243 92 32 Dirofilaria immitis nuclear hormone receptor DAF-12a mRNA, complete cds blastn 458 80.5 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Onchocercidae Dirofilaria Dirofilaria immitis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;