RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA345071" and tax_phylum = "Myxococcota"

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tax_superkingdom 1

tax_phylum 1

  • Myxococcota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA345071 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4220635 4220635 PRJNA345071_P_NODE_5224_length_287_cov_1.093458_g5184_i0 PRJNA345071 5224 287 1.093458 3.13822446 Myxococcus xanthus 34 Bacteria Bacteria 466 7.999999999999999e-127   NTclustered gi|13959795|gb|AY033402.1| 34 g5184 i0 95.122 99.6933797909408 287 12 100 2 1 287 3935 3651 Myxococcus xanthus USC2-1p, USC2-2p, USC2-3p, USC2-4p, USC2-5p, and USC2-6p genes, complete cds blastn 28612 466 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae Myxococcus Myxococcus xanthus
6770864 6770864 PRJNA345071_P_NODE_10006_length_245_cov_0.883721_g9966_i0 PRJNA345071 10006 245 0.883721 2.16511645 Corallococcus sp. EGB 1521117 Bacteria Bacteria 60.2 1.32e-4   NTclustered gi|2094564806|gb|CP079946.1| 1521117 g9966 i0 94.737 0.155102040816327 38 2 16 0 98 135 1051939 1051976 Corallococcus sp. EGB chromosome, complete genome blastn 38 60.2 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae Corallococcus Corallococcus sp. EGB
6770918 6770918 PRJNA345071_P_NODE_2326_length_378_cov_1.468852_g2286_i0 PRJNA345071 2326 378 1.468852 5.55226056 Myxococcus xanthus 34 Bacteria Bacteria 686 0   NTclustered gi|13959808|gb|AY033404.1| 34 g2286 i0 99.211 100.005291005291 380 1 100 2 1 378 1097 718 Myxococcus xanthus USC4-1p, USC4-2p, and USC4-3p genes, complete cds blastn 37802 686 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae Myxococcus Myxococcus xanthus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;