RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA345071" and tax_phylum = "Mollusca"

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tax_superkingdom 1

tax_phylum 1

  • Mollusca · 6 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA345071 · 6 ✖

analysis 1

  • blastn · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1667951 1667951 PRJNA345071_P_NODE_2942_length_347_cov_2.485401_g2902_i0 PRJNA345071 2942 347 2.485401 8.62434147 Mizuhopecten yessoensis 6573 Mollusca Mollusca 195 5.1599999999999995e-45   NTclustered gi|1207937899|ref|XM_021502813.1| 6573 g2902 i0 88.272 23.5965417867435 162 19 47 0 105 266 180 19 PREDICTED: Mizuhopecten yessoensis 60S ribosomal protein L27a-like (LOC110453724), mRNA blastn 8188 195 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Pectinida Pectinidae Mizuhopecten Mizuhopecten yessoensis
1668013 1668013 PRJNA345071_P_NODE_5082_length_289_cov_1.444444_g5042_i0 PRJNA345071 5082 289 1.444444 4.17444316 Mizuhopecten yessoensis 6573 Mollusca Mollusca 58.4 5.75e-4   NTclustered gi|1207937487|ref|XM_021502592.1| 6573 g5042 i0 92.683 0.934256055363322 41 1 14 2 92 132 6028 5990 PREDICTED: Mizuhopecten yessoensis zinc finger homeobox protein 4-like (LOC110453595), transcript variant X4, mRNA blastn 270 58.4 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Pectinida Pectinidae Mizuhopecten Mizuhopecten yessoensis
6173295 6173295 PRJNA345071_P_NODE_7725_length_253_cov_0.866667_g7685_i0 PRJNA345071 7725 253 0.866667 2.19266751 Magallana 147004 Mollusca Mollusca 56.5 0.002   NTclustered gi|2751320469|ref|XM_034475843.2| 29159 g7685 i0 100 1.77865612648221 30 0 12 0 8 37 1365 1394 PREDICTED: Magallana gigas sperm-associated antigen 17 (LOC105348450), transcript variant X6, mRNA blastn 450 56.5 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Ostreida Ostreidae Magallana Magallana gigas
10597054 10597054 PRJNA345071_P_NODE_3369_length_332_cov_2.984556_g3329_i0 PRJNA345071 3369 332 2.984556 9.90872592 Saccostrea cuccullata 36930 Mollusca Mollusca 217 1.05e-51   NTclustered gi|2669127327|ref|XM_062740740.1| 36930 g3329 i0 81.679 53.4668674698795 262 46 79 2 70 330 425 165 PREDICTED: Saccostrea cucullata ubiquitin-ribosomal protein eL40 fusion protein (LOC134258198), mRNA blastn 17751 217 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Ostreida Ostreidae Saccostrea Saccostrea cuccullata
14422128 14422128 PRJNA345071_P_NODE_5712_length_279_cov_1.135922_g5672_i0 PRJNA345071 5712 279 1.135922 3.16922238 Bradybaena similaris 145626 Mollusca Mollusca 52.8 0.026   NTclustered gi|2912986657|dbj|AP039591.1| 145626 g5672 i0 100 0.401433691756272 28 0 10 0 229 256 37424703 37424676 Bradybaena similaris mixture of YIPCMo001421 and YIPCMo001540 DNA, chromosome 10, sequence blastn 112 52.8 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Stylommatophora Camaenidae Bradybaena Bradybaena similaris
21472099 21472099 PRJNA345071_P_NODE_1977_length_402_cov_1.334347_g1937_i0 PRJNA345071 1977 402 1.334347 5.36407494 Opisthokonta 33154 Mollusca Mollusca 62.1 6.4e-5   NTclustered gi|2427343501|ref|XM_052937191.1| 6604 g1937 i0 100 1.34577114427861 33 0 8 0 322 354 522 490 PREDICTED: Mya arenaria uncharacterized LOC128226998 (LOC128226998), mRNA blastn 541 62.1 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Myida Myidae Mya Mya arenaria

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;