RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA345071" and tax_phylum = "Heterolobosea"

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tax_superkingdom 1

tax_phylum 1

  • Heterolobosea · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA345071 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4220569 4220569 PRJNA345071_P_NODE_2504_length_368_cov_1.654237_g2464_i0 PRJNA345071 2504 368 1.654237 6.08759216 Allovahlkampfia sp. S35YCH 2919519 Heterolobosea other_Eukaryota 656 0   NTclustered gi|2199280130|dbj|LC683687.1| 2919519 g2464 i0 98.913 87.0190217391304 368 3 100 1 1 368 1350 984 Allovahlkampfia sp. S35YCH gene for 18S ribosomal RNA, partial sequence blastn 32023 656 1 Eukaryota Discoba   Heterolobosea     Acrasidae Allovahlkampfia Allovahlkampfia sp. S35YCH
4220604 4220604 PRJNA345071_P_NODE_4044_length_311_cov_2.789916_g4004_i0 PRJNA345071 4044 311 2.789916 8.67663876 Allovahlkampfia sp. strain SO/1P 500012 Heterolobosea other_Eukaryota 540 5.09e-149   NTclustered gi|529154115|gb|EU266548.2| 500012 g4004 i0 98.077 38.8231511254019 312 2 100 4 1 311 740 1048 Allovahlkampfia sp. strain SO/1P small subunit ribosomal RNA gene, complete sequence blastn 12074 540 1 Eukaryota Discoba   Heterolobosea     Acrasidae Allovahlkampfia Allovahlkampfia sp. strain SO/1P

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;