RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA345071" and tax_phylum = "Apicomplexa"

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tax_superkingdom 1

tax_phylum 1

  • Apicomplexa · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA345071 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1668081 1668081 PRJNA345071_P_NODE_7642_length_253_cov_0.866667_g7602_i0 PRJNA345071 7642 253 0.866667 2.19266751 Besnoitia besnoiti 94643 SAR_Eukaryotes SAR_Eukaryotes 219 2.1399999999999993e-52   NTclustered gi|1673111941|ref|XM_029359194.1| 94643 g7602 i0 82.988 74.1818181818182 241 41 95 0 4 244 423 183 Besnoitia besnoiti putative calmodulin (BESB_004390), partial mRNA blastn 18768 219 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Sarcocystidae Besnoitia Besnoitia besnoiti
2944030 2944030 PRJNA345071_P_NODE_5263_length_286_cov_1.464789_g5223_i0 PRJNA345071 5263 286 1.464789 4.18929654 Plasmodium falciparum 5833 SAR_Eukaryotes SAR_Eukaryotes 128 4.27e-25   NTclustered gi|154720504|gb|EU032054.1| 5833 g5223 i0 86.325 47.6083916083916 117 16 41 0 27 143 62 178 Plasmodium falciparum isolate DK26D109 merozoite surface protein 1 (MSP1) gene, partial cds blastn 13616 128 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium falciparum
3621070 3621070 PRJNA345071_P_NODE_7703_length_253_cov_0.866667_g7663_i0 PRJNA345071 7703 253 0.866667 2.19266751 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 52.8 0.023   NTclustered gi|915006074|ref|XM_013394478.1| 5801 g7663 i0 100 1.07509881422925 28 0 11 0 72 99 1285 1258 Eimeria acervulina hypothetical protein partial mRNA blastn 272 52.8 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Eimeriidae Eimeria Eimeria acervulina

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;