RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA345071" and tax_clade = "core chlorophytes"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 4 ✖

bioproject 1

  • PRJNA345071 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
393433 393433 PRJNA345071_P_NODE_5581_length_281_cov_1.418269_g5541_i0 PRJNA345071 5581 281 1.418269 3.98533589 Chlorella variabilis 554065 Plants Plants 211 4.04e-50   NTclustered gi|552811023|ref|XM_005843291.1| 554065 g5541 i0 81.481 70.6761565836299 270 39 95 10 16 281 447 185 Chlorella variabilis S-adenosyl-L-homocysteine hydrolase (CHLNCDRAFT_37522) mRNA, complete cds blastn 19860 211 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella variabilis
2943902 2943902 PRJNA345071_P_NODE_10023_length_244_cov_4.929825_g9983_i0 PRJNA345071 10023 244 4.929825 12.028773 Chlorella variabilis 554065 Plants Plants 60.2 1.32e-4   NTclustered gi|552840625|ref|XM_005850035.1| 554065 g9983 i0 88.462 0.213114754098361 52 2 21 4 50 101 833 786 Chlorella variabilis hypothetical protein (CHLNCDRAFT_142159) mRNA, complete cds blastn 52 60.2 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella variabilis
2944122 2944122 PRJNA345071_P_NODE_9623_length_246_cov_0.901734_g9583_i0 PRJNA345071 9623 246 0.901734 2.21826564 Scherffelia dubia 3190 Plants Plants 224 4.45e-54   NTclustered gi|13897311|emb|AJ312020.1| 3190 g9583 i0 83.74 57.7317073170732 246 31 99 7 4 246 331 92 Scherffelia dubia partial mRNA for luminal binding protein (bip gene), strain SAG 40.89 blastn 14202 224 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorodendrophyceae Chlorodendrales Chlorodendraceae Scherffelia Scherffelia dubia
5497087 5497087 PRJNA345071_P_NODE_9225_length_247_cov_0.896552_g9185_i0 PRJNA345071 9225 247 0.896552 2.21448344 Chlorella variabilis 554065 Plants Plants 219 2.08e-52   NTclustered gi|552815074|ref|XM_005844286.1| 554065 g9185 i0 86.058 18.8056680161943 208 24 83 5 8 213 2684 2888 Chlorella variabilis hypothetical protein (CHLNCDRAFT_58930) mRNA, complete cds blastn 4645 219 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella variabilis

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;