RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA340009" and tax_phylum = "Minisyncoccota"

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tax_superkingdom 1

tax_phylum 1

  • Minisyncoccota · 5 ✖

tax_clade 1

bioproject 1

  • PRJNA340009 · 5 ✖

analysis 1

  • blastn · 5 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
392609 392609 PRJNA340009_P_NODE_75941_length_161_cov_0.910714_g75634_i0 PRJNA340009 75941 161 0.910714 1.46624954 Minisyncoccota bacterium 2053589 Bacteria Bacteria 54.7 0.004   NTclustered gi|2531976027|emb|OY282360.1| 2053589 g75634 i0 96.875 0.372670807453416 32 1 20 0 121 152 195716 195685 MAG: Candidatus Pacebacteria bacterium genome assembly, chromosome: 1 blastn 60 54.7 1 Bacteria Bacteria candidate phyla   Minisyncoccota         Minisyncoccota bacterium
2942852 2942852 PRJNA340009_P_NODE_41523_length_198_cov_1.832215_g41216_i0 PRJNA340009 41523 198 1.832215 3.6277857 Minisyncoccota bacterium 2053589 Bacteria Bacteria 311 2.5600000000000003e-80   NTclustered gi|2556886971|gb|CP129473.1| 2053589 g41216 i0 94.949 2 198 10 100 0 1 198 229737 229934 MAG: Candidatus Paceibacterota bacterium isolate cMAG.23 chromosome, complete genome blastn 396 311 1 Bacteria Bacteria candidate phyla   Minisyncoccota         Minisyncoccota bacterium
14421111 14421111 PRJNA340009_P_NODE_56212_length_174_cov_2.312000_g55905_i0 PRJNA340009 56212 174 2.312 4.02288 Minisyncoccota bacterium 2053589 Bacteria Bacteria 117 5.120000000000001e-22   NTclustered gi|2556886971|gb|CP129473.1| 2053589 g55905 i0 81.379 5.05172413793103 145 25 83 2 1 144 441687 441544 MAG: Candidatus Paceibacterota bacterium isolate cMAG.23 chromosome, complete genome blastn 879 117 1 Bacteria Bacteria candidate phyla   Minisyncoccota         Minisyncoccota bacterium
14421260 14421260 PRJNA340009_P_NODE_6972_length_418_cov_12.864499_g6665_i0 PRJNA340009 6972 418 12.864499 53.77360582 Minisyncoccota bacterium 2053589 Bacteria Bacteria 97.1 1.83e-15   NTclustered gi|2556886971|gb|CP129473.1| 2053589 g6665 i0 86.022 23.8564593301435 93 10 22 3 229 320 438359 438449 MAG: Candidatus Paceibacterota bacterium isolate cMAG.23 chromosome, complete genome blastn 9972 97.1 1 Bacteria Bacteria candidate phyla   Minisyncoccota         Minisyncoccota bacterium
23343942 23343942 PRJNA340009_P_NODE_24859_length_246_cov_2.588832_g24552_i0 PRJNA340009 24859 246 2.588832 6.36852672 Minisyncoccota bacterium 2053589 Bacteria Bacteria 91.6 4.71e-14   NTclustered gi|2556887672|gb|CP129474.1| 2053589 g24552 i0 90 0.451219512195122 70 7 28 0 114 183 1864 1795 MAG: Candidatus Paceibacterota bacterium isolate cMAG.22 chromosome, complete genome blastn 111 91.6 1 Bacteria Bacteria candidate phyla   Minisyncoccota         Minisyncoccota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;