RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA340009" and tax_phylum = "Chytridiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Chytridiomycota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA340009 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6769597 6769597 PRJNA340009_P_NODE_23586_length_251_cov_5.886139_g23279_i0 PRJNA340009 23586 251 5.886139 14.77420889 Neocallimastigomycota sp. LLME10_2 PML-2011x 1105088 Fungi Fungi 150 7.84e-32   NTclustered gi|354683748|gb|JN049555.1| 1105088 g23279 i0 91.667 47.9003984063745 108 9 43 0 134 241 141 248 Neocallimastigomycota sp. LLME10_2 PML-2011x 28S ribosomal RNA gene, partial sequence blastn 12023 150 1 Eukaryota Opisthokonta Fungi Chytridiomycota Neocallimastigomycetes       Neocallimastigomycota sp. LLME10_2 PML-2011x
13145912 13145912 PRJNA340009_P_NODE_50431_length_183_cov_1.171642_g50124_i0 PRJNA340009 50431 183 1.171642 2.14410486 Fimicolochytrium jonesii 1396493 Fungi Fungi 174 3.19e-39   NTclustered gi|2432084117|ref|XM_053070665.1| 1396493 g50124 i0 84.571 62.9398907103825 175 27 96 0 9 183 894 1068 Fimicolochytrium jonesii P-loop containing nucleoside triphosphate hydrolase protein (EV422DRAFT_534391), mRNA blastn 11518 174 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Spizellomycetales Powellomycetaceae Fimicolochytrium Fimicolochytrium jonesii
15694887 15694887 PRJNA340009_P_NODE_46673_length_188_cov_6.604317_g46366_i0 PRJNA340009 46673 188 6.604317 12.41611596 Dinomyces arenysensis 1477495 Fungi Fungi 143 9.289999999999999e-30   NTclustered gi|2214409771|gb|ON113503.1| 1477495 g46366 i0 84.211 46.9946808510638 152 19 80 5 23 172 474 326 Dinomyces arenysensis strain ICMB1101 large subunit ribosomal RNA gene, partial sequence blastn 8835 143 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Rhizophydiales Dinomycetaceae Dinomyces Dinomyces arenysensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;