RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA340009" and tax_phylum = "Chloroflexota"

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tax_superkingdom 1

tax_phylum 1

  • Chloroflexota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA340009 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2942617 2942617 PRJNA340009_P_NODE_2343_length_646_cov_7.142379_g2058_i0 PRJNA340009 2343 646 7.142379 46.13976834 Anaerolinea thermophila 167964 Bacteria Bacteria 54.7 0.018   NTclustered gi|319993263|dbj|AP012029.1| 926569 g2058 i0 96.97 0.0510835913312693 33 0 5 1 472 503 1278736 1278768 Anaerolinea thermophila UNI-1 DNA, complete genome blastn 33 54.7 1 Bacteria   Bacillati Chloroflexota Anaerolineae Anaerolineales Anaerolineaceae Anaerolinea Anaerolinea thermophila
5495914 5495914 PRJNA340009_P_NODE_48285_length_186_cov_1.489051_g47978_i0 PRJNA340009 48285 186 1.489051 2.76963486 Roseiflexus sp. RS-1 357808 Bacteria Bacteria 220 4.12e-53   NTclustered gi|148566298|gb|CP000686.1| 357808 g47978 i0 88.462 1.97311827956989 182 21 98 0 1 182 5293562 5293381 Roseiflexus sp. RS-1, complete genome blastn 367 220 1 Bacteria   Bacillati Chloroflexota Chloroflexia Chloroflexales Roseiflexaceae Roseiflexus Roseiflexus sp. RS-1
10595793 10595793 PRJNA340009_P_NODE_2969_length_589_cov_23.783333_g2674_i0 PRJNA340009 2969 589 23.783333 140.08383137 Phototrophicaceae bacterium 3069543 Bacteria Bacteria 95.3 9.54e-15   NTclustered gi|2893356046|emb|OZ220469.1| 3069543 g2674 i0 87.209 0.981324278438031 86 8 23 1 228 313 2201226 2201308 MAG: Phototrophicaceae bacterium isolate 149760b3-584d-4ebc-81cd-1236e649b30c genome assembly, chromosome: 1 blastn 578 95.3 1 Bacteria   Bacillati Chloroflexota Candidatus Thermofontia Phototrophicales Phototrophicaceae   Phototrophicaceae bacterium
14421342 14421342 PRJNA340009_P_NODE_76912_length_161_cov_0.910714_g76605_i0 PRJNA340009 76912 161 0.910714 1.46624954 Aggregatilineales bacterium 2952883 Bacteria Bacteria 102 1.31e-17   NTclustered gi|2621706248|emb|OY764157.1| 2952883 g76605 i0 84.615 2.91925465838509 104 14 64 2 53 155 1452867 1452765 MAG: Aggregatilineales bacterium isolate e8f4d38d-de70-4490-8638-1b8803f995b9 genome assembly, chromosome: 1 blastn 470 102 1 Bacteria   Bacillati Chloroflexota Anaerolineae Aggregatilineales     Aggregatilineales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;