RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA340009" and tax_phylum = "Chlorobiota"

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tax_superkingdom 1

tax_phylum 1

  • Chlorobiota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA340009 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2942497 2942497 PRJNA340009_P_NODE_14703_length_308_cov_6.633205_g14396_i0 PRJNA340009 14703 308 6.633205 20.4302714 Chlorobiota bacterium 2268192 Bacteria Bacteria 549 8.359999999999996e-152   NTclustered gi|1958119998|gb|CP065014.1| 2268192 g14396 i0 99.34 0.983766233766234 303 2 98 0 1 303 1946528 1946830 MAG: Chlorobiota bacterium isolate Ribe_18-Q3-R11-54_MAXAC.096_cln chromosome, complete genome blastn 303 549 1 Bacteria FCB group Pseudomonadati Chlorobiota         Chlorobiota bacterium
4219377 4219377 PRJNA340009_P_NODE_35224_length_212_cov_2.429448_g34917_i0 PRJNA340009 35224 212 2.429448 5.15042976 Chloroherpeton thalassium 100716 Bacteria Bacteria 54.7 0.005   NTclustered gi|193087197|gb|CP001100.1| 517418 g34917 i0 87.5 0.358490566037736 48 4 23 2 59 106 1577615 1577570 Chloroherpeton thalassium ATCC 35110, complete genome blastn 76 54.7 1 Bacteria FCB group Pseudomonadati Chlorobiota Chlorobiia Chlorobiales Chloroherpetonaceae Chloroherpeton Chloroherpeton thalassium
6769669 6769669 PRJNA340009_P_NODE_29866_length_227_cov_7.775281_g29559_i0 PRJNA340009 29866 227 7.775281 17.64988787 Chlorobiota bacterium 2268192 Bacteria Bacteria 403 4.85e-108   NTclustered gi|1958119998|gb|CP065014.1| 2268192 g29559 i0 99.55 0.977973568281938 222 0 97 1 1 221 3056388 3056609 MAG: Chlorobiota bacterium isolate Ribe_18-Q3-R11-54_MAXAC.096_cln chromosome, complete genome blastn 222 403 1 Bacteria FCB group Pseudomonadati Chlorobiota         Chlorobiota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;