RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA340009" and tax_phylum = "Candidatus Saccharimonadota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Candidatus Saccharimonadota · 6 ✖

tax_clade 1

bioproject 1

  • PRJNA340009 · 6 ✖

analysis 1

  • blastn · 6 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2943098 2943098 PRJNA340009_P_NODE_64403_length_166_cov_0.871795_g64096_i0 PRJNA340009 64403 166 0.871795 1.4471797 Candidatus Saccharimonadota bacterium 2026720 Bacteria Bacteria 93.5 8.19e-15   NTclustered gi|1958118994|gb|CP065013.1| 2026720 g64096 i0 86.747 5.06024096385542 83 11 50 0 51 133 252270 252352 Candidatus Saccharibacteria bacterium isolate Ribe_18-Q3-R11-54_BATAC.540_fly chromosome, complete genome blastn 840 93.5 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota         Candidatus Saccharimonadota bacterium
6770124 6770124 PRJNA340009_P_NODE_69826_length_164_cov_0.886957_g69519_i0 PRJNA340009 69826 164 0.886957 1.45460948 Candidatus Saccharibacteria bacterium GW2011_GWC2_44_17 1619070 Bacteria Bacteria 202 1.28e-47   NTclustered gi|837350690|gb|CP011211.1| 1619070 g69519 i0 93.382 8.35975609756098 136 9 83 0 18 153 851544 851409 Candidatus Saccharibacteria bacterium GW2011_GWC2_44_17, complete genome blastn 1371 202 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota         Candidatus Saccharibacteria bacterium GW2011_GWC2_44_17
9320003 9320003 PRJNA340009_P_NODE_23588_length_251_cov_5.792079_g23281_i0 PRJNA340009 23588 251 5.792079 14.53811829 uncultured Candidatus Saccharibacteria bacterium 179883 Bacteria Bacteria 65.8 2.92e-6   NTclustered gi|2874253997|emb|OY970322.1| 179883 g23281 i0 95.122 0.334661354581673 41 2 16 0 61 101 529085 529125 MAG: uncultured Candidatus Saccharibacteria bacterium isolate MFD05512.bin.c.2 genome assembly, chromosome: 1 blastn 84 65.8 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota         uncultured Candidatus Saccharibacteria bacterium
15695016 15695016 PRJNA340009_P_NODE_58273_length_171_cov_4.180328_g57966_i0 PRJNA340009 58273 171 4.180328 7.14836088 Candidatus Saccharibacteria genomosp. TM7-H1 2080739 Bacteria Bacteria 278 2.17e-70   NTclustered gi|1566427536|gb|CP026537.1| 2080739 g57966 i0 95.906 1 171 7 100 0 1 171 262173 262003 Candidatus Saccharibacteria genomosp. TM7-H1 isolate E1 chromosome blastn 171 278 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota         Candidatus Saccharibacteria genomosp. TM7-H1
22068876 22068876 PRJNA340009_P_NODE_59258_length_170_cov_1.685950_g58951_i0 PRJNA340009 59258 170 1.68595 2.866115 Candidatus Saccharimonadota bacterium 2026720 Bacteria Bacteria 128 2.3e-25   NTclustered gi|1950821269|gb|CP066696.1| 2026720 g58951 i0 80.357 0.988235294117647 168 33 99 0 3 170 735444 735277 Candidatus Saccharibacteria bacterium isolate NC_groundwater_1927_Pr3_S-0.2um_48_6 chromosome blastn 168 128 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota         Candidatus Saccharimonadota bacterium
23344385 23344385 PRJNA340009_P_NODE_64699_length_166_cov_0.871795_g64392_i0 PRJNA340009 64699 166 0.871795 1.4471797 Candidatus Saccharimonadota bacterium 2026720 Bacteria Bacteria 119 1.35e-22   NTclustered gi|1958071672|gb|CP064992.1| 2026720 g64392 i0 83.465 0.765060240963855 127 21 77 0 10 136 315032 315158 Candidatus Saccharibacteria bacterium isolate Hirt_18-Q3-R61-65_BATAC.98_uni chromosome, complete genome blastn 127 119 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota         Candidatus Saccharimonadota bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;